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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttattccatcacaatcttctaatgttttacttcatgttcaaaatcagtttcagggaagtatttgacgtcgttagaatggaaactttccttttccaaaatatgtttgtagGTGGCTACCTATTGACATAGCACGGATGTGGAGTCGTCATTGGTTAGAACCGTTGCTTTCACCAAATTCTGATGTTGTCATTCCAGCCTTTCCTCATTCC

Basic information

species Arabidopsis thaliana
transcript AT5G07270.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125046090|gb|EL118359.1|EL118359
EST:     GAACTGCAACGG                         GTGGCTACCTATTGACATAGCACGGATGTGGAGTCGTCATTGGATAGAACC
genomic: GAACTGCAACGGgtaagttatt ... atgtttgtagGTGGCTACCTATTGACATAGCACGGATGTGGAGTCGTCATTGGTTAGAACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtatttgacgtcgttagaatggaaactttccttttccaaaatatgtttgtagGTGGCTACCTATTGACATAGCACGGATGTGGAGTCGTCATTGGTTAGAACCGTTGCTTTCACCAAATTCTGATGTTGTCATTCCAGCCTTTCCTCATTCC
     atttgac  putative branch site (score: 4)
                                        aaaatatgtttgta  TA-rich tract