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gttagtccccaagatctttacgtattaagttgtcatttatgctaaagttgcaaataactcaatatgcgaatggatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGG
species | Arabidopsis thaliana |
transcript | AT5G06360.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAG GTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGEST: gi|86050594|gb|DR346349.1|DR346349
genomic: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAGgttagtcccc ... gatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
EST: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAG GTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGEST: gi|86050593|gb|DR346348.1|DR346348
genomic: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAGgttagtcccc ... gatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
EST: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAG GTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGEST: gi|86072911|gb|DR368668.1|DR368668
genomic: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAGgttagtcccc ... gatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
EST: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAG GTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
genomic: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAGgttagtcccc ... gatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
agttgtcatttatgctaaagttgcaaataactcaatatgcgaatggatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGG
aaataac putative branch site (score: 2)
tttttc putative PPT
aaataactcaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtccccaagatctttacgtattaagttgtcatttatgctaaagttgcaaataactcaatatgcgaatggatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA