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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaactatatttccgtttcgtgttctgaattttacaaattatggagaaactatttgacaatgtccaaacctatgtgttttgcgctctttaaaatattctagtcactgtctctgctgttggttgatttcgtctaatgaaatatattctcgtaaaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCCG

Basic information

species Arabidopsis thaliana
transcript AT5G05780.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164186048|gb|ES012184.1|ES012184
EST:     TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAG                         GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGA
genomic: TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGA
EST: gi|164148049|gb|ES032853.1|ES032853
EST:     TTTTATACCATCTACAG                         GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
genomic: TTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
EST: gi|124977862|gb|EL051137.1|EL051137
EST:     CCCTCTAAACCATGAGATTTTATACCATCTACAG                         GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
genomic: CCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
EST: gi|124877863|gb|EH957300.1|EH957300
EST:     TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAG                         GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAA
genomic: TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAA
EST: gi|86079670|gb|DR375427.1|DR375427
EST:     TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAG                         GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
genomic: TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
EST: gi|124983346|gb|EL056084.1|EL056084
EST:     TAATCGAAGGAAAGCTCCCTCTAAACCANGAGATTTTATACCATCTACAG                         GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
genomic: TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctctgctgttggttgatttcgtctaatgaaatatattctcgtaaaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCCG
                      gtctaat  putative branch site (score: 3)
                       tctaatgaaatatatt  TA-rich tract