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gtaaatctctcttttctcaaagctgcattaatctttatatcatttttgaagctaacctttatatcatatttgaagcagAACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAATGAAGTTGAGGATAAGAGATTAGAAAAGGAACTGCTAGAGAATGAAAAGC
species | Arabidopsis thaliana |
transcript | AT5G05730.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTAAAGCAG AACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAATEST: gi|125253510|gb|EL267595.1|EL267595
genomic: GATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTAAAGCAGgtaaatctct ... tttgaagcagAACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAAT
EST: AGAAATTCTCACCAAAGTAAAGCAG AACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAATEST: gi|116398981|gb|EG441573.1|EG441573
genomic: AGAAATTCTCACCAAAGTAAAGCAGgtaaatctct ... tttgaagcagAACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAAT
EST: GATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTAAAGCAG AACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAATEST: gi|116399901|gb|EG442493.1|EG442493
genomic: GATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTAAAGCAGgtaaatctct ... tttgaagcagAACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAAT
EST: GATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTAAAGCAG AACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGA
genomic: GATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTAAAGCAGgtaaatctct ... tttgaagcagAACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGA
tgcattaatctttatatcatttttgaagctaacctttatatcatatttgaagcagAACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAATGAAGTTGAGGATAAGAGATTAGAAAAGGAACTGCTAGAGAATGAAAAGC
agctaac putative branch site (score: 2)
taatctttatatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatctctcttttctcaaagctgcattaatctttatatcatttttgaagctaacctttatatcatatttgaagcagAACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAATGAAGTTGAGGATAAGAGATTAGAAAAGGAACTGCTAGAGAATGAAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA