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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttggcaacccttagttaaaactctttcggtccactgaaacttaaaacccacttttcttcccgcagATGACTGGTGCCCGAATTAAAATATCAGACCGAGGTGATTTTATGTCTGGAACCACTGATAG

Basic information

species Arabidopsis thaliana
transcript AT5G04430.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124837839|gb|EH922278.1|EH922278
EST:     TAGGATTGGTGCTTGGACGTGGAGGAAGAAACATCATGGAAATCACTCAG                         ATGACTGGTGCCCGAATTAAAATATCAGACCGAGGT
genomic: TAGGATTGGTGCTTGGACGTGGAGGAAGAAACATCATGGAAATCACTCAGgtatttggca ... cttcccgcagATGACTGGTGCCCGAATTAAAATATCAGACCGAGGT
EST: gi|86078249|gb|DR374006.1|DR374006
EST:     TAGGATTGGTGCTTGGACGTGGAGGAAGAAACATCATGGAAATCACTCAG                         ATGACTGGTGCCCGAATTAAAATATCAGACCGAGGTGATTTTATGTCTGGA
genomic: TAGGATTGGTGCTTGGACGTGGAGGAAGAAACATCATGGAAATCACTCAGgtatttggca ... cttcccgcagATGACTGGTGCCCGAATTAAAATATCAGACCGAGGTGATTTTATGTCTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagttaaaactctttcggtccactgaaacttaaaacccacttttcttcccgcagATGACTGGTGCCCGAATTAAAATATCAGACCGAGGTGATTTTATGTCTGGAACCACTGATAG
                                    cccacttttcttcccg  CT-rich tract
                          aaacttaaaa  TA-rich tract