1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttcgccgtattaacatctagggcgaatgatatatatgtatgaatacaaatgttatcggattatatattctttctcaaaattttgttttggatttacagTTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAAAAAGCGATCGGAATGCACCACACAAAGAGCTTATGTCTAAGAGCGCTGGTGA
species | Arabidopsis thaliana |
transcript | AT5G01240.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAAAACGCGTTTCCGTGACACCGCCGTTATCCTCATGCTCATCCATCAG TTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAAAAAEST: gi|164212377|gb|EL981816.1|EL981816
genomic: CTAAAACGCGTTTCCGTGACACCGCCGTTATCCTCATGCTCATCCATCAGgttcctatca ... ggatttacagTTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAAAAA
EST: TGCTCATCCATCAG TTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAAAAA
genomic: TGCTCATCCATCAGgttcctatca ... ggatttacagTTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAAAAA
tacaaatgttatcggattatatattctttctcaaaattttgttttggatttacagTTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAAAAAGCGATCGGAATGCACCACACAAAGAGCTTATGTCTAAGAGCGCTGGTGA
attatatattctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcgccgtattaacatctagggcgaatgatatatatgtatgaatacaaatgttatcggattatatattctttctcaaaattttgttttggatttacagTTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAAAAAGCGATCGGAATGCACCACACAAAGAGCTTATGTCTAAGAGCGCTGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT