1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatgctaccactgttaagctataaaaaagaatttatctttccctgtggttttgctcatttgtaacttcaaatagGCTTTAAACCGTCTTTCAACGATTTGGGATGCACGTGGTGAAGCATACACTAAAGCCAGCGCAAGAGTTTCCTTGGAGA
species | Arabidopsis thaliana |
transcript | AT4G39540.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTACATGATGATGAGTCA-GGGACACATACACAGCG GCTTTAAACCGTCTTTCAACGATTT-GGATGCACGTGGTGAAGCATACACTEST: gi|124748495|gb|EH838625.1|EH838625
genomic: GCTACATGATGATGAGTCAGGGGACACATACACAGCGgtaatgctac ... cttcaaatagGCTTTAAACCGTCTTTCAACGATTTGGGATGCACGTGGTGAAGCATACACT
EST: GTTCAAGACCATTGCTACATGATGATGAGTCAGGGGACACATACACAGCG GCTTTAAACCGTCTTTCEST: gi|86084950|gb|DR380709.1|DR380709
genomic: GTTCAAGACCATTGCTACATGATGATGAGTCAGGGGACACATACACAGCGgtaatgctac ... cttcaaatagGCTTTAAACCGTCTTTC
EST: GTTCAAGACCATTGCTACATGATGATGAGTCAGGGGACACATACACAGCG GCTTTAAACCGTCTTTCAACGATTTGGGATGCACGTGGTGAAGCATACACT
genomic: GTTCAAGACCATTGCTACATGATGATGAGTCAGGGGACACATACACAGCGgtaatgctac ... cttcaaatagGCTTTAAACCGTCTTTCAACGATTTGGGATGCACGTGGTGAAGCATACACT
tataaaaaagaatttatctttccctgtggttttgctcatttgtaacttcaaatagGCTTTAAACCGTCTTTCAACGATTTGGGATGCACGTGGTGAAGCATACACTAAAGCCAGCGCAAGAGTTTCCTTGGAGA
ttgtaac putative branch site (score: 2)
aaaagaatttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgctaccactgttaagctataaaaaagaatttatctttccctgtggttttgctcatttgtaacttcaaatagGCTTTAAACCGTCTTTCAACGATTTGGGATGCACGTGGTGAAGCATACACTAAAGCCAGCGCAAGAGTTTCCTTGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA