1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgagctgctttagcctcttgtcacataattactatctcataataaaacacacagatataattctagacttttgtttctccagGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGTATATCCACCATTGATGTCATGAACTCTATCGCCAGAGGACAGAA
species | Arabidopsis thaliana |
transcript | AT4G38510.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATTGACAACGGTCCACCTATATTGCCTGAGGCGTACTTGGATATTTCTG GAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGAEST: gi|86066806|gb|DR362563.1|DR362563
genomic: CATTGACAACGGTCCACCTATATTGCCTGAGGCGTACTTGGATATTTCTGgtgagctgct ... gtttctccagGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGA
EST: CATTGACAACGGTCCACCTATATTGCCTGAGGCGNACTAGGATATTTCTG GAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAANAGATGATTCAGAEST: gi|116450411|gb|EG493003.1|EG493003
genomic: CATTGACAACGGTCCACCTATATTGCCTGAGGCGTACTTGGATATTTCTGgtgagctgct ... gtttctccagGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGA
EST: GGCGTACTTGGATATTTCTG GAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGAEST: gi|86066801|gb|DR362558.1|DR362558
genomic: GGCGTACTTGGATATTTCTGgtgagctgct ... gtttctccagGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGA
EST: CATTGACAACGGTCCACCTATATTGCCTGAGGCGTACTTGGATATTTCTG GAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGA
genomic: CATTGACAACGGTCCACCTATATTGCCTGAGGCGTACTTGGATATTTCTGgtgagctgct ... gtttctccagGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGA
attactatctcataataaaacacacagatataattctagacttttgtttctccagGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGTATATCCACCATTGATGTCATGAACTCTATCGCCAGAGGACAGAA
cttttgtttctcc CT-rich tract
tatctcataataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgctttagcctcttgtcacataattactatctcataataaaacacacagatataattctagacttttgtttctccagGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGTATATCCACCATTGATGTCATGAACTCTATCGCCAGAGGACAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA