Sequence
atgc intronic sequence ATGC exonic sequencegtaagaatttcttcttttgatactctctttagaacacatagaatgagaaatggacatattgaatacatctcatcttggctacagaactggatatcgagtgagcatcatgatagtctaataagatgtcaacatatcatttacatatctcttttcttgctgtacagCCACTACAACATGAACCGCATCAGGCTAGTCTGGTCTCGCATATGGAGCATCCTGTCAGATTTTTTTGTATCTGTTGGCTTGTCAGAGAATCTTTCTGTT
Basic information
species | Arabidopsis thaliana |
transcript | AT4G38200.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G38200.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 7
gtaagaatttcttcttttgatactctctttagaacacatagaatgagaaatggacatattgaatacatctcatcttggctacagaactggatatcgagtgagcatcatgatagtctaataagatgtcaacatatcatttacatatctcttttcttgctgtacagCCACTACAACATGAACCGCATCAGGCTAGTCTGGTCTCGCATATGGAGCATCCTGTCAGATTTTTTTGTATCTGTTGGCTTGTCAGAGAATCTTTCTGTT
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------------------------------------------------------aaggttgtaaaaatgtcattttgaacagataag-agatatgggatgcgttttataatgatgccat--gttatttatttattttttat-----tttttgtttgtt--tcagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164213050|gb|EL977278.1|EL977278EST: GTATTTAGCCTTACAAAATTAGTTGAGATCGC CCACTACAACATGAACCGCATCAGGCTAGTCTGGTCTCGCATATGGAGCAT
genomic: GTATTTAGCCTTACAAAATTAGTTGAGATCGCgtaagaattt ... tgctgtacagCCACTACAACATGAACCGCATCAGGCTAGTCTGGTCTCGCATATGGAGCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atagtctaataagatgtcaacatatcatttacatatctcttttcttgctgtacagCCACTACAACATGAACCGCATCAGGCTAGTCTGGTCTCGCATATGGAGCATCCTGTCAGATTTTTTTGTATCTGTTGGCTTGTCAGAGAATCTTTCTGTT
gtctaat putative branch site (score: 3)
tatctcttttcttgct putative PPT
atatcatttacatat TA-rich tract