1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattaaaccccaataaagagttttctctgttttgatacataataaagagacctaactgttgtttgtttcgtgtgttaatatcttacagATTGATGACAAGGTTCTTAACAAACCAGAGTAGATACACTCTAGATAGTGTTCTAAGTAAGATGACTTGTCCGCTTCTGTTGGTTTGGGGAGATCTTGAT
species | Arabidopsis thaliana |
transcript | AT4G36530.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCATTTCAAAACCTGCAACAGATCCAAATGCTGGAGAAGTATACTACAG ATTGATGACAAGGTTCTTAACAAAEST: gi|86080076|gb|DR375833.1|DR375833
genomic: TCCATTTCAAAACCTGCAACAGATCCAAATGCTGGAGAAGTATACTACAGgtattaaacc ... tatcttacagATTGATGACAAGGTTCTTAACAAA
EST: TCCATTTCAAAACCTGCAACAGATCCAAATGCTGGAGAAGTATACTACAG ATTGATGACAAGGTTCTTAACAAACCAGAGTAGATACACTCTAGATAGTGTEST: gi|124890928|gb|EH969830.1|EH969830
genomic: TCCATTTCAAAACCTGCAACAGATCCAAATGCTGGAGAAGTATACTACAGgtattaaacc ... tatcttacagATTGATGACAAGGTTCTTAACAAACCAGAGTAGATACACTCTAGATAGTGT
EST: TCCATTTCAAAACCTGCAACAGATCCAAATGCTGGAGAAGTATACTACAG ATTGATGACAAGGTTCTTAACAAACCAGAGTAGATACACTCTAGAT
genomic: TCCATTTCAAAACCTGCAACAGATCCAAATGCTGGAGAAGTATACTACAGgtattaaacc ... tatcttacagATTGATGACAAGGTTCTTAACAAACCAGAGTAGATACACTCTAGAT
gatacataataaagagacctaactgttgtttgtttcgtgtgttaatatcttacagATTGATGACAAGGTTCTTAACAAACCAGAGTAGATACACTCTAGATAGTGTTCTAAGTAAGATGACTTGTCCGCTTCTGTTGGTTTGGGGAGATCTTGAT
ttaatatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaaaccccaataaagagttttctctgttttgatacataataaagagacctaactgttgtttgtttcgtgtgttaatatcttacagATTGATGACAAGGTTCTTAACAAACCAGAGTAGATACACTCTAGATAGTGTTCTAAGTAAGATGACTTGTCCGCTTCTGTTGGTTTGGGGAGATCTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC