Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattggttcatgttctgttacacctttttacacagtctctgaattgctcattcaagaatctggaattgtcttaatgttctaattaatatccagGAAGCTTGGAACAGATTCAACTCAGAAGGACGTTGA

Basic information

species Arabidopsis thaliana
transcript AT4G36520.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36520.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA16G25190.1 (Glycine max), 3'ss of exon 9
gtattggttcatgttc--tgttacacctttttacacagtctctg--------aattgctcattcaagaatc--tggaattgtcttaatgttctaattaatatccagGAAGCTTGGAACAGATTCAACTCAGAAGGACGTTGA----------------------------------------------------------------
      ||||| |||   ||   || |||  | || || || |          |   || |||   |  |   | |  |||  ||  |   |   | |||||||||||||||||||||| ||||||||||||||  || |                                                                  
------gttcaagttgcatggagcatcttagtccatagactttattatgaacgacctcttattttggctttctttgttttgcttttttccccccttcaatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAGCACACACTGTTCTGTTTTTTAACATTCCCCTTTGCAAGAGAGCAGTTCCCTTACCTAGCAATAT

upper sequence: AT4G36520.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA02G06160.1 (Glycine max), 3'ss of exon 14
----gtattggttcatg--ttctgttac---acctttttacacagtctctgaattgctcattcaagaatctggaattgtcttaatgttctaattaatatccagGAAGCTTGGAACAGATTCAACTCAGAAGGACGTTGA----------------------------------------------------------------
     | || || | ||   | | |||    |   || |   |   |||| | ||  || |||     | |     | ||||    | ||  | |||||||||||||||||||||| ||||||||||||||  || |                                                                  
gagcatcttagtccttggactttattaattgattattatgatcgacctctcattttgtctttctttgttttc---ctttctttgcctccttttcaatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAGCACACACTGTTCTGTTTTTGAACATGTCCCTTTGCAAGAGAGCAGCTCCCTTCCCTAGCAATGT

upper sequence: AT4G36520.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA16G25150.1 (Glycine max), 3'ss of exon 7
gtattggttcatgttc--tgttacacctttttacacagtctctgaattgctcattcaagaatctggaattgtcttaatgttctaatt----------aatatccagGAAGCTTGGAACAGATTCAACTCAGAAGGACGTTGA
      ||||| |||   ||   || |||    || || || |    ||  |   |    || | |  ||   ||  | ||||  ||          |||||||||||||||||||||| ||||||||||||||  || |  
------gttcaagttgcatggagcatcttagaccatagactttattatgaacgaccccttattttggctttctttgtttttcttttttccccctttcaatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAG

upper sequence: AT4G36520.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA11G07550.1 (Glycine max), 3'ss of exon 12
-----gtattggttcatgttctgttacacctttttacacagtctctgaattgctcattcaagaatctggaattgtcttaat-gttctaattaatat---ccagGAAGCTTGGAACAGATTCAACTCAGAAGGACGTTGA----------------------------------------------------------------
     ||  | ||  |||| |  |  ||| |  | |||  |  |     | | |   | |||  ||    | |   |||||  || || || |  |    |||||||||||||||| |||||||||||| |  || | |                                                                
agttggtcattgtcaatgtacaatctcacgtcatgacaatgcttt---gtagtttgataaagcttcatatacttcattaattattatactttacgtacttcagGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAACATGCCTGGCAGCCAAGGTCTGTTTTTTTCTCCCTCCCTGTCTCTTGCAAGTGTGTATAGAAGC

upper sequence: AT4G36520.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA01G37760.1 (Glycine max), 3'ss of exon 7
gtattggttcatgttc--tgttacacctttttacacagtctctgaattgctcattcaagaatctggaattgtcttaat-gttctaattaatat---ccagGAAGCTTGGAACAGATTCAACTCAGAAGGACGTTGA----------------------------------------------------------------
|   | ||  |||| |  | | ||  | ||| |        ||   | | |   | |||  ||    | |   |||||  || || ||||| |    |||||||||||||||| |||||||||||| |  || | |                                                                
gccattgtcaatgtacaatctcacgtcatttaatggcaaagctttgtagtttgataaagcttcatatactacattaattattatacttaatgtacttcagGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAACAGCCTGGCAGCCCAGGTCTGTTTTTTTCTCCCTCCCTGTCTCTTGCAAGTGTGTATAGAAGCT

upper sequence: AT4G36520.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 7
-------gtattggttcatgttctgttacacctttttacacagtctctgaattgctcattcaagaatctggaattgtcttaatgttctaattaatatccagGAAGCTTGGAACAGATTCAACTCAGAAGGACGTTGA----------------------------------------------------------------
       |||      | |  |    ||    |         || |||| |   ||          | |  || | | | | |||  |  ||| |   |||||||||||||||| ||||||||||||||  || |||                                                                
gtgcagagtagcaaacctttgttcaataattgtagcctttttgtttctgtaaccctatcaattttttttttaaatctttaattgtatttgtta-tcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAGCTTGGACATCATAGTTATACTGCACATTTGTAACTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaattgctcattcaagaatctggaattgtcttaatgttctaattaatatccagGAAGCTTGGAACAGATTCAACTCAGAAGGACGTTGA
                              tcttaatgttctaatt  TA-rich tract