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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtttgcttctggttcttttttgtttgttttgcttcatcaacatccaaaatgcttccaattcttggaaagctattcatttttattctttcttttcctatatcagGTGGACTTGGATGCATATGTAGTGTCACCCAAGATTCAACTTGTAG

Basic information

species Arabidopsis thaliana
transcript AT4G36440.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36440.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv04s0023g02560.t01 (Vitis vinifera), 3'ss of exon 9
gtgtgtttgcttctggttcttttttgtttgttttgcttcatcaacatccaaaatgcttccaattcttggaaag---ctattcatttttattctttcttttcctatatcagGTGGACTTGGATGCATATGTAGTGTCACCCAAGATTCAACTTGTAG
      |   | ||   || | |    | || |  |||| |  || |||| ||  |||    ||||   |||    ||  |||| | |  ||||||||||| ||| ||||||| ||||||||||||||| | ||| ||  | || |||||||| ||
------tgattcctctctcctctaaactcgtgt--cttcttgtacctccagaactcttt--gttctctaaaattccctgctcatgtcttatctttcttttcatatctcagGTGAACTTGGATGCATATGCAATGTTACTTATGAGTCAACTTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcttccaattcttggaaagctattcatttttattctttcttttcctatatcagGTGGACTTGGATGCATATGTAGTGTCACCCAAGATTCAACTTGTAG
                     ctattcatttttattc  CT-rich tract
                      tattcatttttattct  TA-rich tract