Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatgcacaagcaaatgccatatatttccattatttttggttaacttataagttactcaacttatggatttggtttgtagCACATTCATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGGTTCCAATAGACATATCTGTTCTTAACAATATGCGTCAGTTTGTGAAATTCAGCCGTCTGAA

Basic information

species Arabidopsis thaliana
transcript AT4G36070.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36070.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA11G08180.1 (Glycine max), 3'ss of exon 8
-----gtatgttatgcacaagcaaatgccatatatttccattatttttggttaacttataagtta--------ctcaacttatggatttgg---tttgtagCACATTCATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGGTTCCAATAGACATATCTGTTCTTAACAATATGCGTCAGTTTGTGAAATTCAGCCGTCTGAA
     ||||  ||     |      | || ||| |   ||| ||||      ||  ||||   ||         |  ||| ||| |||  |   ||| |||||||| ||||||| | ||||||||| ||||| | |||| |||| || || |||||||| || ||||| ||||| |||||||||||||  || ||  ||||
taactgtattctaactggagtttttttccttatctaaacat-atttaaaacaaagctataccctaatgttgtgttgtactgatgaattctgatatttctagCACATCCATGGGTTAGAGAAGGAGGAGAGGCATTAGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGACAGTTTGTGAAATATAGTCGGTTGAA

upper sequence: AT4G36070.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA01G37100.1 (Glycine max), 3'ss of exon 8
----gtatgttatgcacaagcaaatgccatatatttccat-tatttttggttaa--------cttataagttactcaacttatggatttgg---tttgtagCACATTCATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGGTTCCAATAGACATATCTGTTCTTAACAATATGCGTCAGTTTGTGAAATTCAGCCGTCTGAA
    ||||  ||   | ||     | || | ||| |  |  || ||      ||        |||||    |  |  ||| | | |||  |   |||  ||||||| ||||||| | ||||||||| ||||| | |||| |||| || || |||||||| || ||||| ||||| |||||||||||||  || ||  ||||
aactgtattctaactataatttgtttcctt-tatctaaacgtagttaaaacaaagctatacccttatgttgtgttgtactgacgaattctgatatttccagCACATCCATGGGTTAGAGAAGGAGGAGAGGCATTAGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGACAGTTTGTGAAATATAGTCGGTTGAA

upper sequence: AT4G36070.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA02G05440.1 (Glycine max), 3'ss of exon 7
----------------gtatgttatgcacaagcaaatgc-catatatttccattatttttggttaacttataagttactcaacttatggatttggt-ttgtagCACATTCATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGGTTCCAATAGACATATCTGTTCTTAACAATATGCGTCAGTTTGTGAAATTCAGCCGTCTGAA
                 | | ||||    || |||| |  | | ||| |  | |  | |||  | |  | | |  |  |    |||   |  |  | ||  ||||||| ||||||| | |||||||||||| || |  ||| |||| || || |||||||| || | ||| ||||| |||||||||||||  || ||  ||||
acttattgtcttctttttttcttatatgtaatcaaaagtgcttttatgtgtaattgtgttgcattatgt-tgaactgttttgatta--aacctaatatttcagCACATCCATGGGTTAGAGAAGGAGGTGAAGCATTGGAGATTCCTATTGATATATCTGTCCTCAGCAACATGCGGCAGTTTGTGAAATATAGTCGAATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccattatttttggttaacttataagttactcaacttatggatttggtttgtagCACATTCATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGGTTCCAATAGACATATCTGTTCTTAACAATATGCGTCAGTTTGTGAAATTCAGCCGTCTGAA
             ggttaac  putative branch site (score: 3)
     ttatttttggttaact  TA-rich tract