Sequence
atgc intronic sequence ATGC exonic sequencegtatgtttaattcttggttaagagtctgagagatttgattaggataagccagattctaagctcgggtcttcattcagGTACCAAAGATTACAATCATAACGGGTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTATGTTCATTTGGCCAA
Basic information
| species | Arabidopsis thaliana |
| transcript | AT4G34030.1 |
| intron # | 7 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G34030.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os08g32850.2 (Oryza sativa), 3'ss of exon 6
--------------gtatgtt-taattcttgg-ttaagagtctgagagatt----tgattaggataagccagattcta-agctcgggtctt--cattcagGTACCAAAGATTACAATCATAACGGGTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTATGTTCATTTGGCCAA
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ttactggcataaatgtcctttgtggttttaggatttaaaataccagaacttgcagcaatgaatcttagcagtaatagatatcttgtatctctacacacagGTACCGAAAATTACCATAATTGTTGGTGGAAGTTTTGGTGCTGGAAACTATGGAATGTGTGGACGTGCATACAGTCCAAATTTTTTGTTTATGTGGCCAA
upper sequence: AT4G34030.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA02G14860.1 (Glycine max), 3'ss of exon 6
----------gtatgttta---attcttggt-----taagagtctgagagatttgatt--aggataagccagattctaagctcgggt---cttcattcagGTACCAAAGATTACAATCATAACGGGTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTATGTTCATTTGGCCAA
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atggttctaagtatgcttatagagtaatggtgattctcaaaacatgagagatatttttcaagagcaaataagaattcttcttcaaataaaacacgtgcagGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTA
upper sequence: AT4G34030.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA07G33620.1 (Glycine max), 3'ss of exon 6
-------------gtatgttta-attcttggt-----taagagtctgagagatttgatt--aggataagccagattctaagctcgggt--cttcattcagGTACCAAAGATTACAATCATAACGGGTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTATGTTCATTTGGCCAA
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cagaaggttctaagtatgcttataataatggtgattctcaaaacatgagacatatttttcaagggcaaataatagttcttcttcaaataaatacgtgcagGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTCGGTGCAGGAAACTATGCAATGTGTGGTCGTGCCTATAGTCCCAACTTCTTGTTCCTTTGGCCAA
upper sequence: AT4G34030.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv03s0063g00290.t01 (Vitis vinifera), 3'ss of exon 7
----------------------gtatgtttaattcttggttaagagtctgagagatttgattaggataagccag-attctaagctcgggtcttcattcagGTACCAAAGATTACAATCATAACGGGTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTATGTTCATTTGGCCAA
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taatgagtgcaaagcttttgagttacattttctctttaatatggttcttttgttagtacttttgaatcacaaaggaaattaatacagagaaaatgcacagGTTCCTAAAATTACTATTATTGTTGGCGGAAGCTTTGGTGCTGGAAATTATGCAATGTGTGGGCGTGCATATAGTCCCAATTTCATGTTCCTTTGGCCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|301503246|gb|HO208786.1|HO208786EST: GCATTGCAAAAGCTGGAGCGAAAATGGTGATGGCAGTATCCTGTGCTAAG GTACCAAAGATTACAATCATAACGGGTGCAAGCTTTGGTGCTGGAAACTAT
genomic: GCATTGCAAAAGCTGGAGCGAAAATGGTGATGGCAGTATCCTGTGCTAAGgtatgtttaa ... cttcattcagGTACCAAAGATTACAATCATAACGGGTGCAAGCTTTGGTGCTGGAAACTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtctgagagatttgattaggataagccagattctaagctcgggtcttcattcagGTACCAAAGATTACAATCATAACGGGTGCAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTATGTTCATTTGGCCAA
atttgat putative branch site (score: 5)
tcttcattc putative PPT
atttgatta TA-rich tract
