Sequence
atgc intronic sequence ATGC exonic sequencegttgtctcctatacccaccctgtttattgtcatagtgtttagatgcttggcctcctccaaaacaaaattcttggtttctcgcagGAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAACAG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G32330.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G32330.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os02g10690.1 (Oryza sativa), 3'ss of exon 6
-----gttgtctcctatacccaccctgtttattgtcatagtgt-ttagatgcttggcctcctccaaaacaaaattcttggtttctcgcagGAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAACAG
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gtaatattgttttacttttcttggaaatgttaccccatcttgcattgcatgtgttgcctgct--aatattagtttctttatattgcacagGAGACTGAAGAAGCTGAACTCAAAATGCTTAGGAAGAGTTTGAACTTCAAGGCAACACCAATGCCCAGCTTCTACCAGGAACCAACTCCTCCAAAGGTGG
upper sequence: AT4G32330.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv04s0008g05480.t01 (Vitis vinifera), 3'ss of exon 7
-----------------gttgtctcctatacccaccctgtttattgtcatagtgtttagatgcttggcctcctccaaaacaaaattcttggtttctcgcagGAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAACAG
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gttgtactattttatgcctagttccataatgcaattgtggagactctaatttgttagtaaagtttgttctttttctgacaagttcttctattgttttacagGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAGCAACGCCCATGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125131741|gb|EL174199.1|EL174199EST: CCAAGTCCAAG GAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAA
genomic: CCAAGTCCAAGgttgtctcct ... tttctcgcagGAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatagtgtttagatgcttggcctcctccaaaacaaaattcttggtttctcgcagGAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAACAG
tttctcgc CT-rich tract
aaaacaaaattctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgtctcctatacccaccctgtttattgtcatagtgtttagatgcttggcctcctccaaaacaaaattcttggtttctcgcagGAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC