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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatagtttgctcttttaatacatcaccattttgtttttctacagattcttaatcgtttctttcctctgtttgcagTCATATAGTTTCAGGAGAGGAACATACCCATCTACTATATATTCACTGTCTTTTGGACCATCGACACAGCTTCCAGATATATTAATTGCAACTAGTTCTT

Basic information

species Arabidopsis thaliana
transcript AT4G30510.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30510.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os02g54910.1 (Oryza sativa), 3'ss of exon 7
gtgaatagtttgctcttttaatacatcaccattttgtttttctacagattcttaatcgtttctttcctctgttt----gcagTCATATAGTTTCAGGAGAGGAACATACCCATCTACTATATATTCACTGTCTTTTGGACCATCGACACAGCTTCCAGATATATTAATTGCAACTAGTTCTT
||||||  |   |  | || ||      |  ||        ||| |  ||| ||| |  || || | |   |       |||||| | |||||  || | |||||||||||||| || ||||||||||| || || |||||||||    | || || ||| |  |  |||| || ||||| |
gtgaat--tcaacgttatttattgtctgctcttgcaaccaactagattttcctaaactctttttacatacatacttcaacagTCACACAGTTTTCGGCGGGGAACATACCCATCAACAATATATTCACTCTCATTCGGACCATCGGATGATCTGCCCGATGTTCTTGTTGCCACAAGTTCAT

upper sequence: AT4G30510.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA17G07800.1 (Glycine max), 3'ss of exon 7
-----------------------gtgaatagtttgctcttttaatacatcaccattttgtttttctacagattcttaatcgtttctttcctctgtttgcagTCATATAGTTTCAGGAGAGGAACATACCCATCTACTATATATTCACTGTCTTTTGGACCATCGACACAGCTTCCAGATATATTAATTGCAACTAGTTCTT
                       || |  |||||  | | ||   |  |     |    ||||||| ||  |    ||||       |  | |    |||||||||||| || || || || ||||| || |||||||||| ||| || || ||||||||||| |  ||||||||||||||  |    ||  | |||||||
attctttatggattatataccttgt-agcagttttttatcttttaattttgtgttacaatttttcttcaagtgtagaatctgactgatgtttttcccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTCTTTCATTTGGACCATCAAAGCAGCTTCCAGATATTCTTGCAGCCTCAAGTTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcaccattttgtttttctacagattcttaatcgtttctttcctctgtttgcagTCATATAGTTTCAGGAGAGGAACATACCCATCTACTATATATTCACTGTCTTTTGGACCATCGACACAGCTTCCAGATATATTAATTGCAACTAGTTCTT
                          tcttaat  putative branch site (score: 3)
                         ttcttaatcgtttctt  CT-rich tract
       attttgtttttcta  TA-rich tract