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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcacctctttatataggtgttagagaacatgtgtttactttttttgttaatcaatgctatatatcatgattgtttttttttttttttgatatggttttagCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACGGACAATCAAAATGCAAGTGAAGAGCCTAAGAAAGATCTGAGAAGTCGAG

Basic information

species Arabidopsis thaliana
transcript AT4G29100.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124853818|gb|EH938255.1|EH938255
EST:     CAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG                         CTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTTCGTCGTCATCTA
genomic: CAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGgtacgtccat ... atggttttagCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTT-CGTCGTCATCTA
EST: gi|47831794|gb|CK121478.1|CK121478
EST:     TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG                         CTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACG
genomic: TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGgtacgtccat ... atggttttagCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACG
EST: gi|86059910|gb|DR355667.1|DR355667
EST:     TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG                         CTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACG
genomic: TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGgtacgtccat ... atggttttagCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACG
EST: gi|47832050|gb|CK121734.1|CK121734
EST:     TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG                         CTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACG
genomic: TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAGgtacgtccat ... atggttttagCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatcaatgctatatatcatgattgtttttttttttttttgatatggttttagCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACGGACAATCAAAATGCAAGTGAAGAGCCTAAGAAAGATCTGAGAAGTCGAG
            tatatatcatgattgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcacctctttatataggtgttagagaacatgtgtttactttttttgttaatcaatgctatatatcatgattgtttttttttttttttgatatggttttagCTCGTGAACGATCAGTGCATGAAGAGAAGAGGAGCTTCGTCGTCATCTACGGACAATCAAAATGCAAGTGAAGAGCCTAAGAAAGATCTGAGAAGTCGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -cctcttt
- - - - - - - - - - - gagaaca
- - - - - - - - - - - - - - - - - - - - - - - -taatcaa