1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaaaattccgtgtttcacacacatttcatcaaaagtctttcgtctctaaagttagttaagttcgttggattgcagAATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCGCGACTGTAAAAACCGAGAATGGGATTCAACAGCAAGTACCAATTGTGAA
species | Arabidopsis thaliana |
transcript | AT4G29000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAG AATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCGEST: gi|116399763|gb|EG442355.1|EG442355
genomic: CAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAGgtaaaaattc ... tggattgcagAATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCG
EST: CAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAG AATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCG
genomic: CAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAGgtaaaaattc ... tggattgcagAATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCG
acatttcatcaaaagtctttcgtctctaaagttagttaagttcgttggattgcagAATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCGCGACTGTAAAAACCGAGAATGGGATTCAACAGCAAGTACCAATTGTGAA
ctctaaa putative branch site (score: 3)
taaagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaattccgtgtttcacacacatttcatcaaaagtctttcgtctctaaagttagttaagttcgttggattgcagAATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCGCGACTGTAAAAACCGAGAATGGGATTCAACAGCAAGTACCAATTGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG