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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtctctatgtccatttggctcagggttatctatttgctctagcacgctttccgctgacgataagtatatctctatgtttttgcagAAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAGATCCCCTCAACATATGATGAATTAACTATACATATGCACATTCTGGATTCAGTAA

Basic information

species Arabidopsis thaliana
transcript AT4G27720.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830344|gb|CK120028.1|CK120028
EST:     TGTTGCAAGTCTCCTACAAAGGCGGCTCATGATGATTGTTGACAAACCAA                         AAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAGATCCCC
genomic: TGTTGCAAGTCTCCTACAAAGGCGGCTCATGATGATTGTTGACAAACCAAgtatgttgtc ... gtttttgcagAAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAGATCCCC
EST: gi|86083914|gb|DR379673.1|DR379673
EST:     TGTTGCAAGTCTCCTACAAAGGCGGCTCATGATGATTGTTGACAAACCAA                         AAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAGATCCCC
genomic: TGTTGCAAGTCTCCTACAAAGGCGGCTCATGATGATTGTTGACAAACCAAgtatgttgtc ... gtttttgcagAAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAGATCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgctctagcacgctttccgctgacgataagtatatctctatgtttttgcagAAACAAATGACTGGACACCCCTTGAAGAAAGAAACACAGAAGAAGATCCCCTCAACATATGATGAATTAACTATACATATGCACATTCTGGATTCAGTAA
                     cgctgac  putative branch site (score: 3)
                                            tgttttt  putative PPT
                             ataagtatat  TA-rich tract