1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttggaattttaagtcatatcactattattgctgtgtttaggtttcttaactttttctgtccaaaatatgatctcatacggtgtcactgtaaaatttgcagGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAGCCTTCGGTAACATTGCCAAGGAG
species | Arabidopsis thaliana |
transcript | AT4G27585.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTGGGGGAGTAGAG GCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAG-CTTCGGTAACATTEST: gi|125324654|gb|EL338734.1|EL338734
genomic: AAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTGGGGGAGTAGAGgtgagtaatt ... aaatttgcagGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAGCCTTCGGTAACATT
EST: AAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTGGGGGAGTAGAG GCGGCGAGTTTGAGAGTTGCAGAGCAATACAEST: gi|125226042|gb|EL240127.1|EL240127
genomic: AAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTGGGGGAGTAGAGgtgagtaatt ... aaatttgcagGCGGCGAGTTTGAGAGTTGCAGAGCAATACA
EST: AAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTGGGGGAGTAGAG GCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAGCCTTCGGT
genomic: AAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTGGGGGAGTAGAGgtgagtaatt ... aaatttgcagGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAGCCTTCGGT
ttaactttttctgtccaaaatatgatctcatacggtgtcactgtaaaatttgcagGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAGCCTTCGGTAACATTGCCAAGGAG
tcttaac putative branch site (score: 2)
aaaatatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggaattttaagtcatatcactattattgctgtgtttaggtttcttaactttttctgtccaaaatatgatctcatacggtgtcactgtaaaatttgcagGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAGCCTTCGGTAACATTGCCAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - -tgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcatac