Sequence
atgc intronic sequence ATGC exonic sequencegtgaatataaactctcttaaagtatctgaattgttttgtttcttgtcatctcaagtttgtgcctttgctcacttctgtcatggatatttctgcagCCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAA
Basic information
| species | Arabidopsis thaliana |
| transcript | AT4G26940.1 |
| intron # | 7 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G26940.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 3'ss of exon 8
gtgaatataaactc-tcttaaagtatctgaattgttttgtttctt---gtcatctcaagtttgtgcctttgctcacttctgtcatggatattt-----ctgcagCCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAA
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----agctagtctcatcaatgcatatttgattcattgcatgtagaaagggcatcactgctatagacaattgattctttatgacattggtgttttgcttttgcagCAACACTTGGACAGATTTTATCTAATCATGCATTGAAGCCCAGAGTATATATTGGATGCATGAAATCTGGACCTGTCCTAACTGAGAA
upper sequence: AT4G26940.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os03g38050.1 (Oryza sativa), 3'ss of exon 7
----gtgaatataaactctc--ttaaagtatctgaattgttttgtttcttgtcatctcaagtttgtgcctttgctcacttctgtcatggatatttctgcagCCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAA
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cccttttactggaaaattccatctcaattattgtgatactataatttttttagatattgttatagtgatactataataatcagatataaaaatgt-tgcagCAACTCTTGGTAACATATTGGCTAAGCATCGGTCGAAGCCTCGAGCTTACATTGGTTGCATGAAATCTGGTCCAGTCCTGGCTCAGAA
upper sequence: AT4G26940.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G132866_T02 (Zea mays), 3'ss of exon 6
---gtgaatataaactctcttaaagtatctgaattgttttgtttcttgtcatctca-agtttgtgcctttgctcacttctgtcatggat--atttctgcagCCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAA
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ttaaaaaactagaagtacaagctgatgtgtgaatctgcataaaaaatagcatatgataagctctggcaaagca-actaacgccaaagttcggcatttgcagCAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAA
upper sequence: AT4G26940.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv19s0090g00560.t01 (Vitis vinifera), 3'ss of exon 7
gtgaatataaactctcttaaagtatc-tgaattgttttgt-----ttcttgtcatctcaagtttgtgcctttgctcact---tctgtcatggatatttctgcagCCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAA
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---gattcttactct-tgaaagtatcatatgtggccatgtagaaatgaatgctattgcttcctttatccttttcatatggggttcatcttttacattgctgcagCAACACTGGGAGCAACTTTAGCGAGGCACCGTTCAAAACCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116459771|gb|EG502363.1|EG502363EST: GGATGCAGACTTCTACGTCAAAGTCGATGATGATGTGCATGTAAATATAG CCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACA
genomic: GGATGCAGACTTCTACGTCAAAGTCGATGATGATGTGCATGTAAATATAGgtgaatataa ... atttctgcagCCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttgtcatctcaagtttgtgcctttgctcacttctgtcatggatatttctgcagCCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAA
tgctcac putative branch site (score: 2)
tatttct putative PPT
atatttct TA-rich tract
