Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttcacttctaccttacaattctacaatttcagtgtttactgatcttttggtggtaaccatgtagGAAATTAGAAGACGTGGCCTGAAAGTTGCAGTTATTGGAATCCCGAAAACAATCGATAATGACATACCT

Basic information

species Arabidopsis thaliana
transcript AT4G26270.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301503229|gb|HO208769.1|HO208769
EST:     ACATTATAGGAGGAGATGGAACACAGCGAGGAGCATCTGTCATATTTGAG                         GAAATTAGAAGACGTGGCCTGAAAGTTGCAGTTATTGGAATCCCGAAAACA
genomic: ACATTATAGGAGGAGATGGAACACAGCGAGGAGCATCTGTCATATTTGAGgtaaatttca ... aaccatgtagGAAATTAGAAGACGTGGCCTGAAAGTTGCAGTTATTGGAATCCCGAAAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttacaattctacaatttcagtgtttactgatcttttggtggtaaccatgtagGAAATTAGAAGACGTGGCCTGAAAGTTGCAGTTATTGGAATCCCGAAAACAATCGATAATGACATACCT
                                         tggtaac  putative branch site (score: 2)
            tacaattt  TA-rich tract