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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctttacttattatattttgtgcacatctttaatgacgttgtgggatttatcaataactattatccctgctcatcttccagCCAAATCTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAGAACGTGGAAATGTGGACAATGGTAGTTGCCAGTCAACTTCTACAGTAGTAA

Basic information

species Arabidopsis thaliana
transcript AT4G25770.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116396432|gb|EG439024.1|EG439024
EST:     GAACTCCCAAAG                         CCAAATCTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAGAA
genomic: GAACTCCCAAAGgtatgtcttt ... catcttccagCCAAATCTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAGAA
EST: gi|125314533|gb|EL328618.1|EL328618
EST:     TGGTTGGATGGAGGACATCTTCAATTCGCCGTCCAAATGAACTCCCAAAG                         CCAAATCTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAG
genomic: TGGTTGGATGGAGGACATCTTCAATTCGCCGTCCAAATGAACTCCCAAAGgtatgtcttt ... catcttccagCCAAATCTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAG
EST: gi|116396433|gb|EG439025.1|EG439025
EST:     GAACTCCCAAAG                         CCAAATCTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAGAA
genomic: GAACTCCCAAAGgtatgtcttt ... catcttccagCCAAATCTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAGAA
EST: gi|116396435|gb|EG439027.1|EG439027
EST:     GAACTCCCAAAG                         CCAAATTTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAGAA
genomic: GAACTCCCAAAGgtatgtcttt ... catcttccagCCAAATCTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAGAA
EST: gi|116396437|gb|EG439029.1|EG439029
EST:     GAACTCCCAAAG                         CCAAATCTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAGAA
genomic: GAACTCCCAAAGgtatgtcttt ... catcttccagCCAAATCTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttaatgacgttgtgggatttatcaataactattatccctgctcatcttccagCCAAATCTTCTAGCAACGGATCCAAACTATCCACACATTGTATACGTAGAACGTGGAAATGTGGACAATGGTAGTTGCCAGTCAACTTCTACAGTAGTAA
                         caataac  putative branch site (score: 2)
                                     tccctgctcatcttcc  putative PPT
                   atttatcaataactat  TA-rich tract