Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcctccattatctcagataggtttttgactttttccaatggcattggcggcttttaaagcatttggatcttgtctaatgctgcattggaaaatgtattttgttttctagCAATATACTACACAGTTTGTCCCAAGCATATGGCCAAATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGGTAAA

Basic information

species Arabidopsis thaliana
transcript AT4G24810.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G24810.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 7
gtaagctcctccattatctcagataggtttttgactttttccaatggcattggcggcttttaaagcatttggatcttgtctaatgctgcattggaaaatgt--attttgtt-ttctagCAATATACTACACAGTTTGTCCCAAGCATATGGCCAAATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGGTAAA
      | ||| ||||| |        || |||||   || |      |||||    ||     ||  ||   | ||    ||   |  ||    | |  |  ||| |||  ||  || || || ||  | |||||| |   ||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| |||||  ||||  | |||
------tgctctattatat--------ttcttgacaagttactcaataattggtc-tttccgttgccctt---tttttcaaaacagtaaatccatacacttcaattctgtaattgcagGAAGATCCTTGAAAGTTTGACTATAGCATATGGGCAAATGATACTGAAGAGTGGTTTCTTCCATGCAGATCCCCATCCTGGAAATATTCTGATCTGCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagcatttggatcttgtctaatgctgcattggaaaatgtattttgttttctagCAATATACTACACAGTTTGTCCCAAGCATATGGCCAAATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGGTAAA
                 gtctaat  putative branch site (score: 3)
                                          ttttgttttct  putative PPT
                                  aaaatgtattttgttt  TA-rich tract