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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttttcttctttactctctctcttcttgacatcagataacctgaaaaaattactaatgatggactgacttgtttggtttaatgcagTAAATTCATGAAATCGGTGATACAAGGTTTCCTTCCGGGTATTGCACTGAAGCTTTTCCTCGCCTTTCTGCCATCCATTTTGATGATCATGTCCAAATTT

Basic information

species Arabidopsis thaliana
transcript AT4G22120.5
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22120.5 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA17G01400.1 (Glycine max), 3'ss of exon 7
gtgagtttttcttctttactctctctcttcttgacatcagataacctgaaaaaattactaatgatggactgacttg--tttggttta--atgcagTAAATTCATGAAATCGGTGATACAAGGTTTCCTTCCGGGTATTGCACTGAAGCTTTTCCTCGCCTTTCTGCCATCCATTTTGATGATCATGTCCAAATTT
|| |||||    || |   | |  ||||   | | || |    | |   |   ||  ||   |||  ||| | |||  |||  ||||   ||||||   ||||| || ||  | || |||||||| || |||||||||||| |||||||||| |||  |||| ||||| | || |||||||||||||| ||||||
gtaagtttcatctcatagttgtacctctgaat-atataattccatccccatgcatccctggagatt-acttatttgaatttactttattgtgcagTCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAAGCTTTTTCTCATCTTTTTGCCAACAATATTGATGATCATGTCAAAATTT

upper sequence: AT4G22120.5 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA07G39320.1 (Glycine max), 3'ss of exon 8
gtgagtttttcttctttactctctctcttcttgacatcagataacctgaaaaaattactaatgatggactgacttg--tttggttta--atgcagTAAATTCATGAAATCGGTGATACAAGGTTTCCTTCCGGGTATTGCACTGAAGCTTTTCCTCGCCTTTCTGCCATCCATTTTGATGATCATGTCCAAATTT
|| ||| |    || |  || |  ||||   | | || |    | |   |   ||  ||   | |  ||| | |||  |||  ||||   ||||||   ||||| || ||| | || |||||||| || || ||||||||| |||||||||| |||  |||  ||||| | || |||||||||||||| ||||||
gtaagtctcatctcatagctgtacctctgaat-atataattccatccccatgcatccctggaggtt-acttatttgaatttactttattgtgcagTCCTTTCATTAAGTCGTTCATTCAAGGTTTTCTACCCGGTATTGCATTGAAGCTTTTTCTCATCTTCTTGCCAACAATATTGATGATCATGTCAAAATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414733|gb|EG457325.1|EG457325
EST:     ATTGAAGGGATTGTGAAAGCTGCTCCGTTCTTGAAGTTTATTGTAGATGA                         TAAATTCATGAAATCGGTGATACAAGGTTTCCTTCCGGGTATTGCACTGAA
genomic: ATTGAAGGGATTGTGAAAGCTGCTCCGTTCTTGAAGTTTATTGTAGATGAgtgagttttt ... tttaatgcagTAAATTCATGAAATCGGTGATACAAGGTTTCCTTCCGGGTATTGCACTGAA
EST: gi|125127026|gb|EL172086.1|EL172086
EST:     ATTGAAGGGATTGTGAAAGCTGCTCCGTTCTTGAAGTTTATTGTAGATGA                         TAAATTCATGAAATCGGTGATACAAGGTTTCCTTCCGGGTA
genomic: ATTGAAGGGATTGTGAAAGCTGCTCCGTTCTTGAAGTTTATTGTAGATGAgtgagttttt ... tttaatgcagTAAATTCATGAAATCGGTGATACAAGGTTTCCTTCCGGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagataacctgaaaaaattactaatgatggactgacttgtttggtttaatgcagTAAATTCATGAAATCGGTGATACAAGGTTTCCTTCCGGGTATTGCACTGAAGCTTTTCCTCGCCTTTCTGCCATCCATTTTGATGATCATGTCCAAATTT
            aaaaaattactaatga  TA-rich tract