Sequence
atgc intronic sequence ATGC exonic sequencegtaattatagtgaatacttttgaaatcttgaaaggttttctctttatatgttcttaccattgtttaagtgatcattattgtcatctctttttctgatcgttatcatcgttttaccagAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G21160.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G21160.4 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os02g10480.1 (Oryza sativa), 3'ss of exon 7
----------------gtaattatagtgaatacttttgaa-atcttgaaaggttttctctttatatgttcttaccat----tgtttaagtgatcattattgtcatctctttttctgatcgttatcatcgttttac------cagAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTG
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gtagtattatgaaatcctaattttc-tgatggtttctgggcaactaattcaagatcgaattcatcgttttgtaccacattgtctctcattcagaacatgcagaaattcttgttctaaatttcaccatatcttcgctgtgtgcagAAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG
upper sequence: AT4G21160.4 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G13070.1 (Glycine max), 3'ss of exon 5
-----------gtaattatagtgaatacttttgaaatcttgaaaggttttctctttatatgttcttaccattgtttaagtgatcattattgtcatctctttttctgat----cgttatcatcgttttaccagAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTG
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gttggttgttctcacttctcattagcatatatattcttgggaaacttttgccctttatcttttatttttaattgaagagtagtagattttgataattttctttctgaattgactttggtgctatgcctccagACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTG
upper sequence: AT4G21160.4 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA05G29940.1 (Glycine max), 3'ss of exon 5
-----------gtaattatagtgaatacttttgaaatcttgaaaggtttt--ctctttatatgttcttaccattgtttaagtgatcattattgtcatctctttttctga-tcgttatcatcgttttac-----cagAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTG
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gttggttgttctcagttctcattagcataaattaattcatgggaaacttttgctctttatcttttatttttaattgaagagtagtagatgttgataattttctttctgaattgactttggtgctatatgccttcagACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTG
upper sequence: AT4G21160.4 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA09G02830.1 (Glycine max), 3'ss of exon 7
gtaattatagtgaatacttttgaa--atcttgaaaggttttctctttatatgttcttaccattgttt--aagtgatcattattgtcatctctttttctga-------tcgttatcatcgttttac-----cagAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTG
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---------gttggtatcactaaatgatcttgggaaactgttgctctgtatcttctatttatagttgtaaaatcagaaacagtaataattttctttctgaaattgatttggtgctattgcttaatgcctgcagACTGTCCAGACAACTATAATAAGGAGCAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCTGAGCATTATGGACAGATAAAATTG
upper sequence: AT4G21160.4 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv10s0003g04900.t01 (Vitis vinifera), 3'ss of exon 7
gtaattatagtgaatacttttgaaatcttgaaaggttttctctttatatgttc--ttaccattgtttaagtgatcattattgtcatctctttttctgatcgttatc-atcgtt-ttaccagAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTG
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--------------------cattgtctagattagattttagtcaaagtggtgaattgcttttagttagacagtgatcattctt-ttactgataatgaagattggctgttgctgttactagACTGTCCAGACACAGGTAATAACGAGCAACTTGAATCCAGTCTGGAATGAGGAACTCATGCTTTCTGTGCCCATGGATTATGGGCCCATAAAAGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86075296|gb|DR371053.1|DR371053EST: GAGATATGATGTCAAGTGATCCCTATGTTGTGTTGACTCTAGGACAACAG AAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAG
genomic: GAGATATGATGTCAAGTGATCCCTATGTTGTGTTGACTCTAGGACAACAGgtaattatag ... gttttaccagAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAG
EST:
gi|164036432|gb|ES151187.1|ES151187EST: CTCTAGGACAACAG AAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAG
genomic: CTCTAGGACAACAGgtaattatag ... gttttaccagAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaagtgatcattattgtcatctctttttctgatcgttatcatcgttttaccagAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTGTCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTG
ttctgat putative branch site (score: 3)
tcgtttt putative PPT
atcattatt TA-rich tract