1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagttctctattctacgctttaaatggttttggtcgggtgtcattgaaaaatattaacatgttcctttgaaaatttatatagGTCGCGATTGGGATGTCAAGTCATCGCAAAACCAGAGCTAGATGGAGTACGCCTAGCCATTCCTTCAGCTACTAGAAATTTTGCGGTTGATGGGTTTGTT
species | Arabidopsis thaliana |
transcript | AT4G21090.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTCGCTTTCGGGTTAACAGCAAC GTCGCGATTGGGATGTCAAGTCATCGCAAAACCAGAGCTAGATGGAGTACGEST: gi|164022496|gb|ES121595.1|ES121595
genomic: TCTCGCTTTCGGGTTAACAGCAACgtgagttctc ... atttatatagGTCGCGATTGGGATGTCAAGTCATCGCAAAACCAGAGCTAGATGGAGTACG
EST: CTCGCTTTCGGGTTAACAGCAAC GTCGCGATTGGGATGTCAAGTCATCGCAAAACCNAGAGCTAGATGGAGTAC
genomic: CTCGCTTTCGGGTTAACAGCAACgtgagttctc ... atttatatagGTCGCGATTGGGATGTCAAGTCATCGCAAAACC-AGAGCTAGATGGAGTAC
ttttggtcgggtgtcattgaaaaatattaacatgttcctttgaaaatttatatagGTCGCGATTGGGATGTCAAGTCATCGCAAAACCAGAGCTAGATGGAGTACGCCTAGCCATTCCTTCAGCTACTAGAAATTTTGCGGTTGATGGGTTTGTT
tattaac putative branch site (score: 1)
aaaaatattaacatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctctattctacgctttaaatggttttggtcgggtgtcattgaaaaatattaacatgttcctttgaaaatttatatagGTCGCGATTGGGATGTCAAGTCATCGCAAAACCAGAGCTAGATGGAGTACGCCTAGCCATTCCTTCAGCTACTAGAAATTTTGCGGTTGATGGGTTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT