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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattattcctatctattaagccacctctgcatggttgagttaagtatagagatctttctgttggaaattttcatttctgattcattttgcatccttagATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGCCAAATGGAACAGCTTGTCCCCCCTCTACATCAACT

Basic information

species Arabidopsis thaliana
transcript AT4G20380.8
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125307311|gb|EL321396.1|EL321396
EST:     CGCTGTTTGTCAATTCGTAACTAACGTTAAT                         ATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGCCAAATGGAACAGCT
genomic: CGCTGTTTGTCAATTCGTAACTAACGTTAATgtgattattc ... gcatccttagATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGCCAAATGGAACAGCT
EST: gi|164119416|gb|ES088020.1|ES088020
EST:     GTGCATCATCCGTCAAATGCGCTGTTTGTCAATTCGTAACTAACGTTAAT                         ATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGC
genomic: GTGCATCATCCGTCAAATGCGCTGTTTGTCAATTCGTAACTAACGTTAATgtgattattc ... gcatccttagATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatagagatctttctgttggaaattttcatttctgattcattttgcatccttagATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGCCAAATGGAACAGCTTGTCCCCCCTCTACATCAACT
                               ttctgat  putative branch site (score: 3)
                                              catcctt  putative PPT
                     aaattttcatttct  TA-rich tract