1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtatttctatcacctgtgttcttcttcttatttaccacattagaggaagatatgacaaagtgactgaaacacacaaattgcagGTGAGCAATGTTGTTGTTGGAGTGACAACTGACAAAAAGTAATCAAGAATGAGTGAGATCTTAAAGATCAAATCCAAATTCTTCCTCTATTCCTGCGTTT
species | Arabidopsis thaliana |
transcript | AT4G20380.5 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAACCGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGCGGAAAGTTG GTGAGCAATGTTGTTGTTGGAGTGACAACTGACAAAAAGTAATCAAGAATGEST: gi|47830281|gb|CK119965.1|CK119965
genomic: AAACCGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGCGGAAAGTTGgtgagtattt ... caaattgcagGTGAGCAATGTTGTTGTTGGAGTGACAACTGACAAAAAGTAATCAAGAATG
EST: AAACCGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGCGGAAAGTTG GTGAGCAATGTTGTTGTTGGAGTGACAACTGACAAAAAGTAATCAAGAATG
genomic: AAACCGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGCGGAAAGTTGgtgagtattt ... caaattgcagGTGAGCAATGTTGTTGTTGGAGTGACAACTGACAAAAAGTAATCAAGAATG
tatttaccacattagaggaagatatgacaaagtgactgaaacacacaaattgcagGTGAGCAATGTTGTTGTTGGAGTGACAACTGACAAAAAGTAATCAAGAATGAGTGAGATCTTAAAGATCAAATCCAAATTCTTCCTCTATTCCTGCGTTT
aagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatttctatcacctgtgttcttcttcttatttaccacattagaggaagatatgacaaagtgactgaaacacacaaattgcagGTGAGCAATGTTGTTGTTGGAGTGACAACTGACAAAAAGTAATCAAGAATGAGTGAGATCTTAAAGATCAAATCCAAATTCTTCCTCTATTCCTGCGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA