1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaaacaaggttctttcttccctcgagaatttatcttgatcttacacttaagatactcctcaagatactctacacctctctgcaagaagtatgacgtggttctaagatacattttctttcggttgttctcttttagGTCTTTGCAGACATGGAAGAGCTGAAGGTGAGCCCAGACGAAGACTCTGCGAGGAGAGTGGCACGAGCCTTCAGGGAACTCAACCAAGAAGAAAATCGAA
species | Arabidopsis thaliana |
transcript | AT4G18975.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGATGATAGCGTTGTATGCTCACCATGACCTTCACGATAAGGTTATCGAG GTCTTTGCAGACATGGAAGAGCTGAAGGTGAGCCCAGACGAAGACTCTGCGEST: gi|116393001|gb|EG435593.1|EG435593
genomic: GGATGATAGCGTTGTATGCTCACCATGACCTTCACGATAAGGTTATCGAGgtaaaacaag ... tctcttttagGTCTTTGCAGACATGGAAGAGCTGAAGGTGAGCCCAGACGAAGACTCTGCG
EST: GGATGATAGCGTTGTATGCTCACCATGACCTTCACGATAAGGTTATCGAG GTCTTTGCAGACATGGAAGAGCTGAAGGTGAGCCCAGACGAAGACTCTGCGEST: gi|164100429|gb|ES210922.1|ES210922
genomic: GGATGATAGCGTTGTATGCTCACCATGACCTTCACGATAAGGTTATCGAGgtaaaacaag ... tctcttttagGTCTTTGCAGACATGGAAGAGCTGAAGGTGAGCCCAGACGAAGACTCTGCG
EST: GGATGATAGCGTTGTATGCTCACCATGACCTTTACGATAAGGTTATCGAG GTCTTTGCAGACATGGAAGAGC
genomic: GGATGATAGCGTTGTATGCTCACCATGACCTTCACGATAAGGTTATCGAGgtaaaacaag ... tctcttttagGTCTTTGCAGACATGGAAGAGC
gcaagaagtatgacgtggttctaagatacattttctttcggttgttctcttttagGTCTTTGCAGACATGGAAGAGCTGAAGGTGAGCCCAGACGAAGACTCTGCGAGGAGAGTGGCACGAGCCTTCAGGGAACTCAACCAAGAAGAAAATCGAA
ttttctttcggttgtt CT-rich tract
atacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacaaggttctttcttccctcgagaatttatcttgatcttacacttaagatactcctcaagatactctacacctctctgcaagaagtatgacgtggttctaagatacattttctttcggttgttctcttttagGTCTTTGCAGACATGGAAGAGCTGAAGGTGAGCCCAGACGAAGACTCTGCGAGGAGAGTGGCACGAGCCTTCAGGGAACTCAACCAAGAAGAAAATCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA