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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtattggatgaatctttcccacatctttttctcatcaaaggctcacacttttggtcttaccgcgtagATGGTAACCGAGAAACAACACAAAGAATCTGCTCCTCCTGCGATTCCAACAGAGAACGGCTCAGAGAAAACGTCATACTTTCTTGCTGAA

Basic information

species Arabidopsis thaliana
transcript AT4G18060.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G18060.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv10s0003g02590.t01 (Vitis vinifera), 3'ss of exon 7
-------gttagtattggatgaatctttcccacatcttt-ttctcatcaaag---------gctcacacttttggtcttaccgcgt---agATGGTAACCGAGAAACAACACAAAGAATCTGCTCCTCCTGCGATTCCAACAGAGAACGGCTCAGAGAAAACGTCATACTTTCTTGCTGAA
        ||  | |||      | ||    | |  ||| || |||||||||         | |||   |||   |  || |  ||   |||||||  | || ||||||   |||||||||||||||||||| |||||| |||||| |  ||||||||| |||   |||||  | ||||||
gttggttcttgttcttgttcttgttttcatgagagatttattttcatcaaagaaaatttaaggtcatgttttgacttgtaacttgtttcagATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058789|gb|DR354546.1|DR354546
EST:     AGAATTATCACTTAAGAATAGCAGCCATCCTCAGTGACATTGAAGCCGAG                         ATGGTAACCGAGAAACAACACAAAGAATCTGCTCCTCCTGCGATTCCAACA
genomic: AGAATTATCACTTAAGAATAGCAGCCATCCTCAGTGACATTGAAGCCGAGgttagtattg ... taccgcgtagATGGTAACCGAGAAACAACACAAAGAATCTGCTCCTCCTGCGATTCCAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttcccacatctttttctcatcaaaggctcacacttttggtcttaccgcgtagATGGTAACCGAGAAACAACACAAAGAATCTGCTCCTCCTGCGATTCCAACAGAGAACGGCTCAGAGAAAACGTCATACTTTCTTGCTGAA
                                         gtcttac  putative branch site (score: 3)
                                          tcttacc  CT-rich tract
          atcttttt  TA-rich tract