Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttttataagcacctctccctattctttcttgtcatttactccaagtaaggtagtatgttaccattttagtgaagttttcgattttccctccagGTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCG

Basic information

species Arabidopsis thaliana
transcript AT4G17150.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA07G40050.1 (Glycine max), 3'ss of exon 8
----gtgttttataagcacctctccctattctttcttgtcatttactccaagtaaggtagtatgttacc-attttagtgaagttttcgattttccctccagGTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCG
    | |  | ||| | |    |  ||       |   |  || | |  ||  |   |  |    | || || |||    | || |   ||    |  |||||| | || ||||| || ||||| | ||||||||| ||||||||||  ||||||||||| || ||||| || ||||| |||||     |   |||||| 
atctgagcatgataggtattattttctggctaaacaaatttttaagtagaatcattttctttccatgcctatcttaaattaattcttt-ttaaatccacagGTTGCACCGAAGACATTCATTCCTGTTTTATTTGGACATGCAAGCGATGACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCA

upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA17G00770.1 (Glycine max), 3'ss of exon 8
gtgttttataagcacctctccctattctttcttgtcattta---ctccaagtaaggtagtatg-ttaccat-tttagtgaagttttcgattttccctccagGTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCG
 ||   | | ||||          |  ||||| |  |   |    |  |||||  || || |  || |||| | ||       ||   |||    |  |||||| | || ||||| || ||||| | ||||||||| ||||||||||  ||||||||||| || ||||| || ||||| |||||     |   |||||| 
-tggaatctgagcatgaaaggtattattttctggctaaacaaatttttaagtagagttgttttctttccatgtctaaaattaattcttattaaatccacagGTTGCACCAAAGACATTCATTCCTGTTTTATTTGGACATGCAAGCGATGACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCA

upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 1
gtgttttataagcacctct----ccctattctttcttgtcatttactccaagtaaggtagtatgttaccattttagtgaagttttcgattttccctccagGTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCG
 | | |||||   |  |      |  |  ||| |    |   ||   |     || | |  |   || || | || |  | | ||   |    | | |||||| | || || || |||||||| ||| ||||||| ||||| |  |  ||||||||||| ||||| || ||||||||| ||||| |||||| |||| ||
ttttcttatagttaatttgaatgcggtgatctgttcatttccttttcctgcacaatgcatcaacatagcactatactttaatgttttgtaacacttgcagGTTGCACCTAAAACATTTATTCCTGCTCTATTTGGCCATGCTACTGAGGACAAATTCATTCAACCCCACCACTCTGACATCATTTTCAAGTCCTATTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccaagtaaggtagtatgttaccattttagtgaagttttcgattttccctccagGTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCG
                                    ttttcgattttccctc  CT-rich tract
                        attttagt  TA-rich tract