1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttaaatcattgtctgaattgaaacatattgtagaaatcaataagtttgcttattgatgtgtgttcctgattgtaaacagGCTGTGAGCATCAATGAGTTTCTGAAGCCAGCAGAGGGTGGGAACTACTACCGAGGAGGTCGTGGTGGCCGTGGACGTGGTGGTCGTGGCCGTGGAGGTG
species | Arabidopsis thaliana |
transcript | AT4G16830.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTCTGATAAGGACAAACGCAAAGATGACAGAGAAGAGAAGGCTAAGAAG GCTGTGAGCATCAATGAGTTTEST: gi|124922231|gb|EL000541.1|EL000541
genomic: GTTCTGATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGgtttaaatca ... ttgtaaacagGCTGTGAGCATCAATGAGTTT
EST: GTTCTGATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAG GCTGTGAGCATCAATGAGTEST: gi|124791925|gb|EH881604.1|EH881604
genomic: GTTCTGATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGgtttaaatca ... ttgtaaacagGCTGTGAGCATCAATGAGT
EST: CAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAG GCTGTGAGCATCAATGAGTTTCTGAAGCCAGCAGAGGGTGGGAACTACTACEST: gi|125179437|gb|EL197192.1|EL197192
genomic: CAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGgtttaaatca ... ttgtaaacagGCTGTGAGCATCAATGAGTTTCTGAAGCCAGCAGAGGGTGGGAACTACTAC
EST: GTTCTGATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAG GCTGTGAGCATCAATGAGTTTCTGAAGCCAGCAGAGGGTGGG
genomic: GTTCTGATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGgtttaaatca ... ttgtaaacagGCTGTGAGCATCAATGAGTTTCTGAAGCCAGCAGAGGGTGGG
atattgtagaaatcaataagtttgcttattgatgtgtgttcctgattgtaaacagGCTGTGAGCATCAATGAGTTTCTGAAGCCAGCAGAGGGTGGGAACTACTACCGAGGAGGTCGTGGTGGCCGTGGACGTGGTGGTCGTGGCCGTGGAGGTG
tcctgat putative branch site (score: 3)
aaatcaataagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaaatcattgtctgaattgaaacatattgtagaaatcaataagtttgcttattgatgtgtgttcctgattgtaaacagGCTGTGAGCATCAATGAGTTTCTGAAGCCAGCAGAGGGTGGGAACTACTACCGAGGAGGTCGTGGTGGCCGTGGACGTGGTGGTCGTGGCCGTGGAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG