1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acaagggtataacttaactgttcttatgctctttagcactctggttaagctctctgctaactctatattgtttctttgttgcaatcttttatattctcagGTATGACTGTGGAATGTTTATGCTTAAGTACATCGATTTTTTCAGCAGAGGCCTGGGGCTATGTTTCAGCCAG
species | Arabidopsis thaliana |
transcript | AT4G15880.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
taagctctctgctaactctatattgtttctttgttgcaatcttttatattctcagGTATGACTGTGGAATGTTTATGCTTAAGTACATCGATTTTTTCAGCAGAGGCCTGGGGCTATGTTTCAGCCAG
tgctaac putative branch site (score: 1)
tcttttatattctc putative PPT
aatcttttatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaagggtataacttaactgttcttatgctctttagcactctggttaagctctctgctaactctatattgtttctttgttgcaatcttttatattctcagGTATGACTGTGGAATGTTTATGCTTAAGTACATCGATTTTTTCAGCAGAGGCCTGGGGCTATGTTTCAGCCAG
- - - - - -acttaac
- - - - - - - - - - - - -atgctct
- - - - - - - - - - - - - - - - - - - - - - - - - tctctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactcta