1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacaatgttctgttttccccttttgtctcatcaaaaacttactctgcaaaagttcatccaagaaaagacacgagaaaagctgtttatggatatcgaaacggctattttacagGAAAGAGTACATCGATAATTTCGTGAAGGTGAATGAAGGTGGTGTCATAGACGCGTCAGCCTAGAGGATTCTCAGTCTTATGCATCAGATTTCTATAAAC
species | Arabidopsis thaliana |
transcript | AT4G14710.5 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAG GAAAGAGTACATCGATAATTTCGTGAAGGTGAATGAAGGTGGTGTCATAGAEST: gi|125184819|gb|EL199773.1|EL199773
genomic: GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAGgtacaatgtt ... tattttacagGAAAGAGTACATCGATAATTTCGTGAAGGTGAATGAAGGTGGTGTCATAGA
EST: AACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAAG GAAAGAGTACATCGATAATTTCGTGAAGGTEST: gi|86082287|gb|DR378046.1|DR378046
genomic: AACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAA-Ggtacaatgtt ... tattttacagGAAAGAGTACATCGATAATTTCGTGAAGGT
EST: GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAG GAAAGAGTACATCGATAATTTCGTGAAGGTGAATGAAGGTGGTGTCATAGAEST: gi|86074670|gb|DR370427.1|DR370427
genomic: GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAGgtacaatgtt ... tattttacagGAAAGAGTACATCGATAATTTCGTGAAGGTGAATGAAGGTGGTGTCATAGA
EST: GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAG GAAAGAGTACATCGATAATTTCGTGAAGGTGAATGAAGGTGGTGTCATAGA
genomic: GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAGgtacaatgtt ... tattttacagGAAAGAGTACATCGATAATTTCGTGAAGGTGAATGAAGGTGGTGTCATAGA
ccaagaaaagacacgagaaaagctgtttatggatatcgaaacggctattttacagGAAAGAGTACATCGATAATTTCGTGAAGGTGAATGAAGGTGGTGTCATAGACGCGTCAGCCTAGAGGATTCTCAGTCTTATGCATCAGATTTCTATAAAC
ctatttt CT-rich tract
tattttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatgttctgttttccccttttgtctcatcaaaaacttactctgcaaaagttcatccaagaaaagacacgagaaaagctgtttatggatatcgaaacggctattttacagGAAAGAGTACATCGATAATTTCGTGAAGGTGAATGAAGGTGGTGTCATAGACGCGTCAGCCTAGAGGATTCTCAGTCTTATGCATCAGATTTCTATAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT