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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatgcagtttttgagaagtgatcataaactaaaaggttccaattaatttataagcatagcatcattatttgtttatcgtctagGATTGGGCTTCTCAAAGTGGATTGCAAATTGCTACCGAGCTATGTGGCTTTGTGACCATTTTGTCAGGAACTTTTCTTCTCCACAAGACAAAAGACATGG

Basic information

species Arabidopsis thaliana
transcript AT4G13800.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G13800.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os04g30450.1 (Oryza sativa), 3'ss of exon 7
-----gtaaaatgcagtttttgagaagtgatcataaactaa-aaggttccaatt-----aatttataagcatagc--atcattatttgtttatcgt-ctagGATTGGGCTTCTCAAAGTGGATTGCAAATTGCTACCGAGCTATGTGGCTTTGTGACCATTTTGTCAGGAACTTTTCTTCTCCACAAGACAAAAGACATGG
      ||  |  || |||  || | ||| | |   | |   || ||  |  ||      ||| | || ||||    ||  |   |   || || | | |||| ||||| ||||| | || |  ||| || || |||||||| ||||| |||||||| ||| |  |||||||||||||||| |||||||| | ||| ||||
attcgatactaaaca-tttccgataggtgctaacccattgttaatgtgacttttttggagattgacaaacatatttgatggtccctaaattttcattccagGACTGGGCCTCTCAGAATGCAACGCAGATAGCAACCGAGCTTTGTGGGTTTGTGACAATTGTTGCAGGAACTTTTCTTCTGCACAAGACCAGAGATATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaaaaggttccaattaatttataagcatagcatcattatttgtttatcgtctagGATTGGGCTTCTCAAAGTGGATTGCAAATTGCTACCGAGCTATGTGGCTTTGTGACCATTTTGTCAGGAACTTTTCTTCTCCACAAGACAAAAGACATGG
                                       tttgttt  CT-rich tract
            aattaatttataagca  TA-rich tract