Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatttttcatgaatgttgtaatgctcatagatctcaaaactatgctttaagaatctaagtgaaactaaaatcgctgacttacctttgacaatgtttggatacagTTGTAGAATGGGCTAATGAGGCACTCAAAGGTTTGGAAAAAGGAGCACCATTTTCTCTTTACCTAACACAAAAGTATTTCTCCAATGTTGCATGTGCCAA

Basic information

species Arabidopsis thaliana
transcript AT4G13360.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116460916|gb|EG503508.1|EG503508
EST:     GGAAACAATAGAAGAGCTCAAAAAGTACCAGCAAAGCACTGAGTCTTCAG                         TTGTAGAATGGGCTAATGAGGCACTCAAAGGTTTGGAAAAAGGAGCACCAT
genomic: GGAAACAATAGAAGAGCTCAAAAAGTACCAGCAAAGCACTGAGTCTTCAGgtattatttt ... ttggatacagTTGTAGAATGGGCTAATGAGGCACTCAAAGGTTTGGAAAAAGGAGCACCAT
EST: gi|125229148|gb|EL243233.1|EL243233
EST:     AAAAAGTACCAGCAAAGCACTGAGTCTTCAG                         TTGTAGAATGGGCTAATGAGGCACTCAAAGGTTTAGGAAAAAGGAGCACCA
genomic: AAAAAGTACCAGCAAAGCACTGAGTCTTCAGgtattatttt ... ttggatacagTTGTAGAATGGGCTAATGAGGCACTCAAAGGTTT-GGAAAAAGGAGCACCA
EST: gi|86083064|gb|DR378823.1|DR378823
EST:     GGAAACAATAGAAGAGCTCAAAAAGTACCAGCAAAGCACTGAGTCTTCAG                         TTGTAGAATGGGCTAATGAGGCACTCAAAGGTTTGGAAAAAGGAGCACCAT
genomic: GGAAACAATAGAAGAGCTCAAAAAGTACCAGCAAAGCACTGAGTCTTCAGgtattatttt ... ttggatacagTTGTAGAATGGGCTAATGAGGCACTCAAAGGTTTGGAAAAAGGAGCACCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatctaagtgaaactaaaatcgctgacttacctttgacaatgtttggatacagTTGTAGAATGGGCTAATGAGGCACTCAAAGGTTTGGAAAAAGGAGCACCATTTTCTCTTTACCTAACACAAAAGTATTTCTCCAATGTTGCATGTGCCAA
            aaactaaaat  TA-rich tract