1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagtgtaattaagacctcttaatagttttcttctcttattcttttaagacctgaaagattattttggttgttcagGTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGGATCAAGAACTCGCGGCTGCATTTCAATCTTTCGGTATTGTTCTGAGTGC
species | Arabidopsis thaliana |
transcript | AT4G03110.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATGTCAACACCTTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAG GTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGGEST: gi|124808374|gb|EH894538.1|EH894538
genomic: CATGTCAACACCTTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAGgttagtgtaa ... ggttgttcagGTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGG
EST: TTGGTTTGAGTTCTGTGGTTCAAACCGAAG GTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGGEST: gi|124753304|gb|EH843434.1|EH843434
genomic: TTGGTTTGAGTTCTGTGGTTCAAACCGAAGgttagtgtaa ... ggttgttcagGTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGG
EST: CATGTCAACACCTTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAG GTCCAGAAGGTGCAAATCTGTTTATCTA
genomic: CATGTCAACACCTTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAGgttagtgtaa ... ggttgttcagGTCCAGAAGGTGCAAATCTGTTTATCTA
aatagttttcttctcttattcttttaagacctgaaagattattttggttgttcagGTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGGATCAAGAACTCGCGGCTGCATTTCAATCTTTCGGTATTGTTCTGAGTGC
tcttaat putative branch site (score: 3)
tcttattcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtaattaagacctcttaatagttttcttctcttattcttttaagacctgaaagattattttggttgttcagGTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGGATCAAGAACTCGCGGCTGCATTTCAATCTTTCGGTATTGTTCTGAGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC