Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcagtcttttaagattttgtattagctggtgtggttatatatttatcagcatgtctaactgcttcaatccagGTCCGCGTCATTATTGTCAAACTAGCTGACCGGTTGCATAATATGCGAACTCTCTGCCACATGCCTCCCCATAAGCAG

Basic information

species Arabidopsis thaliana
transcript AT4G02260.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02260.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G353147_T01 (Zea mays), 3'ss of exon 6
-------gtttcagtcttttaagattttgtattagc-------tggtgtggttatatatttatcagcatgtctaactgct----tcaatcc--agGTCCGCGTCATTATTGTCAAACTAGCTGACCGGTTGCATAATATGCGAACTCTCTGCCACATGCCTCCCCATAAGCAG
        |||   || | |   |  |  ||| ||         | |     | | ||  | | |     |  ||    |    ||||| |  |||| || || |||||||||||||| || ||| |||||||||| ||||| ||||||   || |||||||  || ||||||
gtatcctttttatctcatatggaacatcttatcaggagaaaaaagattcaactctgtacgttttacttaataaaaaaattaaaatcaattcttagGTTCGTGTGATTATTGTCAAACTGGCAGACAGGTTGCATAACATGCGCACTCTCACACATATGCCTCAGCACAAGCAG

upper sequence: AT4G02260.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 7
gtttcagtcttttaagattttgtattagctggtgtg-gttatatatttatcagcatgtctaactgcttcaatccagGTCCGCGTCATTATTGTCAAACTAGCTGACCGGTTGCATAATATGCGAACTCTCTGCCACATGCCTCCCCATAAGCAG
     | | | || |   | | | |       ||   ||  ||| | | |  |||  |  |   |      | ||||||||||| || |||||||||||||| ||| | || ||||||||||| ||||| |  ||||||||||| |||||||||
---gtaatgtattcattatatatttccatcaatgcctgtcttatgtatgtgggcagctaaacaagtgctgcttcagGTCCGCGTTATAATTGTCAAACTAGCCGACAGATTACATAATATGCGCACTCTTTCTCACATGCCTCCACATAAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtattagctggtgtggttatatatttatcagcatgtctaactgcttcaatccagGTCCGCGTCATTATTGTCAAACTAGCTGACCGGTTGCATAATATGCGAACTCTCTGCCACATGCCTCCCCATAAGCAG
                                   gtctaac  putative branch site (score: 2)
                                         ctgcttc  CT-rich tract
                 ttatatatttatca  TA-rich tract