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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcctcttccctaaatttcactatccttgacttcactaaacatcaaaatcagagagaataaaccattgttgtacatttcgcagTTCCGAATCAGAACTGCACCACATGCCCGTTTCAGAAGGGATGGCAACGATCTACACATGAACGTGAACATTACACTG

Basic information

species Arabidopsis thaliana
transcript AT3G62600.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164228332|gb|EL986305.1|EL986305
EST:     AACCCATTCTTGACGGTGACCCTGGTGACCTTAAG                         TTCCGAATCAGAACTGCACCACATGCCC
genomic: AACCCATTCTTGACGGTGACCCTGGTGACCTTAAGgttagcctct ... catttcgcagTTCCGAATCAGAACTGCACCACATGCCC
EST: gi|124998990|gb|EL071259.1|EL071259
EST:     TCTATG-AGACGGCGAACCCATTCTTGACGGTGACCCTGGTGACCTTAAG                         TTCCGAATCAGAA
genomic: TCTATGAAGACGGCGAACCCATTCTTGACGGTGACCCTGGTGACCTTAAGgttagcctct ... catttcgcagTTCCGAATCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttcactaaacatcaaaatcagagagaataaaccattgttgtacatttcgcagTTCCGAATCAGAACTGCACCACATGCCCGTTTCAGAAGGGATGGCAACGATCTACACATGAACGTGAACATTACACTG
     cactaaa  putative branch site (score: 2)
             atcaaaat  TA-rich tract