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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttataactatctcacagtccttttccttattttaccctttttgtttgattctgttgactgtatatgaagtttatccttgaccagtaaccccttttaagATGTCAAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAATTGTAGACAGCAACAACGAAACTTATGAGCT

Basic information

species Arabidopsis thaliana
transcript AT3G61710.1
intron # 7
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116473301|gb|EG515893.1|EG515893
EST:     GCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCA                         ATGTCAAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAATTGTAGACAG
genomic: GCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAgtatccttat ... cccttttaagATGTCAAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAATTGTAGACAG
EST: gi|164235003|gb|EL968065.1|EL968065
EST:     GCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCA                         ATGTCAAGTTAAAGTACAGCCGATGGGGAGTTATCCTAGAA
genomic: GCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAgtatccttat ... cccttttaagATGTCAAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAA
EST: gi|86088399|gb|DR384158.1|DR384158
EST:     GCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCA                         ATGTCAAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAATTGTAGACAG
genomic: GCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAgtatccttat ... cccttttaagATGTCAAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAATTGTAGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgattctgttgactgtatatgaagtttatccttgaccagtaaccccttttaagATGTCAAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAATTGTAGACAGCAACAACGAAACTTATGAGCT
 atccttgac  putative branch site 
                                            cccctttt  putative PPT
                 tatatgaagtttat  TA-rich tract