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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattctctataaatttatttatttcttttgatctaaatactattatttaggttgtttttttcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAATTATCGGCCATGTTTTAACTTGGATTGCGCTCAATCATCCCCAACCTTC

Basic information

species Arabidopsis thaliana
transcript AT3G60940.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116427120|gb|EG469712.1|EG469712
EST:     GACCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAG                         GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
genomic: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: gi|116427111|gb|EG469703.1|EG469703
EST:     GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAG                         GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
genomic: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: gi|116427108|gb|EG469700.1|EG469700
EST:     GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAG                         GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
genomic: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: gi|116427118|gb|EG469710.1|EG469710
EST:     CTCACTTCCACTGGTATCGATCTATACCACGTTCCAG                         GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
genomic: CTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: gi|116427119|gb|EG469711.1|EG469711
EST:     GACCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAG                         GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
genomic: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: gi|116427110|gb|EG469702.1|EG469702
EST:     CTCACTTCCACTGGTATCGATCTATACCACGTTCCAG                         GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
genomic: CTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
EST: gi|116427112|gb|EG469704.1|EG469704
EST:     GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAG                         GAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA
genomic: GATCCAGCTGGCCCTCACTTCCACTGGTATCGATCTATACCACGTTCCAGgtaaaattct ... tcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttatttcttttgatctaaatactattatttaggttgtttttttcttttttagGAAATAAAGTTGGTTCGCGTAAAACGATAAAAGATGCCAGTGACTTTAAAATTATCGGCCATGTTTTAACTTGGATTGCGCTCAATCATCCCCAACCTTC
               atctaaa  putative branch site (score: 3)
                                    ttgtttttttcttttt  putative PPT
                  taaatactattattta  TA-rich tract