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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttgattgatctttttgcctcatttagttctctgtctctacatggttcatacttgttcttagtaatcctactaaatctgctacagTACCCTCCGTTATGTTCCACTTGAGTCACTCGACCCGTCACTAGCTCTCGGATTCTATTGCCAGCACAAAG

Basic information

species Arabidopsis thaliana
transcript AT3G59950.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084696|gb|DR380455.1|DR380455
EST:     CAGTCAAGAAAGAAAATCAAGGATGTTGACACATCGTCTTACCATTGCAA                         TACCCTCCGTTATGTTCCACTTGAGTCACTCGACCCGTCACTAGCTCTCGG
genomic: CAGTCAAGAAAGAAAATCAA-GATGTTGACACATCGTCTTACCATTGCAAgtgagtttga ... tctgctacagTACCCTCCGTTATGTTCCACTTGAGTCACTCGACCCGTCACTAGCTCTCGG
EST: gi|124877413|gb|EH956850.1|EH956850
EST:     AGAAAATCAAGATGTTGACACATCGTCTTACCATTGCAA                         TACCCTCCGTTATGTTCCACTTGAGTCACTCGACCCGTCACTAGCTCTCGG
genomic: AGAAAATCAAGATGTTGACACATCGTCTTACCATTGCAAgtgagtttga ... tctgctacagTACCCTCCGTTATGTTCCACTTGAGTCACTCGACCCGTCACTAGCTCTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtctctacatggttcatacttgttcttagtaatcctactaaatctgctacagTACCCTCCGTTATGTTCCACTTGAGTCACTCGACCCGTCACTAGCTCTCGGATTCTATTGCCAGCACAAAG
                                      tactaaa  putative branch site (score: 1)
                            ttagtaat  TA-rich tract