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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagccacgttctgttccaaatcttaatctcaatatctactcttttcttcattgtataactaagataacgtgaataacaagaaaacttttgtttttgggtttaatagATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTGTGATACAAGGGACGACAGTTTACGAATCCGGTGTATCTTCTCATGACCAGTCGC

Basic information

species Arabidopsis thaliana
transcript AT3G58780.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164171456|gb|EL982421.1|EL982421
EST:     AGAAGAGGGAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG                         ATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGT
genomic: AGAAGAGGGAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAGgttagccacg ... ggtttaatagATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGT
EST: gi|163984586|gb|ES195713.1|ES195713
EST:     AAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG                         ATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTGTGATA
genomic: AAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAGgttagccacg ... ggtttaatagATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTGTGATA
EST: gi|164077774|gb|ES153578.1|ES153578
EST:     GGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG                         ATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTGTGATA
genomic: GGAGTTGCAACACAATAACATGTACCTGCGAGCAAAGgttagccacg ... ggtttaatagATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTGTGATA
EST: gi|164021652|gb|ES170976.1|ES170976
EST:     GAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAG                         ATAGCCGAAGGCGCCAGATTGAATCCGGACCAGC
genomic: GAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAGgttagccacg ... ggtttaatagATAGCCGAAGGCGCCAGATTGAATCCGGACCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtataactaagataacgtgaataacaagaaaacttttgtttttgggtttaatagATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTGTGATACAAGGGACGACAGTTTACGAATCCGGTGTATCTTCTCATGACCAGTCGC
                   gaataac  putative branch site (score: 2)
                             aaaacttttgttttt  TA-rich tract