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gtaatgttaaggctttgattgcaagtgaactcaaattcagatattgtttcttgttatgccagtgtactcaacttgtatgcaatttgcttacagGCCTTATCTTCAGAAGATAGGAAACAAATTCTACACGACATTGCCAATGCCCTTGAAGTAAATGAGAAAACAATTAAAGCTGAGAATGATTTAGATGTTG
species | Arabidopsis thaliana |
transcript | AT3G55610.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCTCGTGACATGGCAGTTTGCTGCAAGGGAAAGCTCAAGAAAGCTTCAG GCCTTATCTTCAGAAGATAGGAAACAAATTCTACACGAEST: gi|86064873|gb|DR360630.1|DR360630
genomic: TTCTCGTGACATGGCAG-TTGCTGCAAGGGAAAGCTCAAGAAAGCTTCAGgtaatgttaa ... ttgcttacagGCCTTATCTTCAGAAGATAGGAAACAAATTCTACACGA
EST: CTTCTCGTGACATGGCAGTTGCTGCAAGGGAAAGCTCAAGAAAGCTTCAG GCCTTATCTTCAGAAGATAGGAAACAAATTCTACACGACATTGCCAATGCCEST: gi|86064872|gb|DR360629.1|DR360629
genomic: CTTCTCGTGACATGGCAGTTGCTGCAAGGGAAAGCTCAAGAAAGCTTCAGgtaatgttaa ... ttgcttacagGCCTTATCTTCAGAAGATAGGAAACAAATTCTACACGACATTGCCAATGCC
EST: CTTCTCGTGACATGGSAGTTGCTGCAAGGGAAAGCTCNAGGAAGCTTCAG GCCTTATCTTCAGAAGATAGGGAAACAAATTCTACACGACATTGSCAATGGEST: gi|86064866|gb|DR360623.1|DR360623
genomic: CTTCTCGTGACATGGCAGTTGCTGCAAGGGAAAGCTCAAGAAAGCTTCAGgtaatgttaa ... ttgcttacagGCCTTATCTTCAGAAGATAGG-AAACAAATTCTACACGACATTGCCAATGC
EST: CTTCTCGTGACATGGCAGTTGCTGCAAGGGAAAGCTCAAGAAAGCTTCAG GCCTTATCTTCAGAAGATAGGAAACAAATTCTACACGACATTGCCAATGCC
genomic: CTTCTCGTGACATGGCAGTTGCTGCAAGGGAAAGCTCAAGAAAGCTTCAGgtaatgttaa ... ttgcttacagGCCTTATCTTCAGAAGATAGGAAACAAATTCTACACGACATTGCCAATGCC
agatattgtttcttgttatgccagtgtactcaacttgtatgcaatttgcttacagGCCTTATCTTCAGAAGATAGGAAACAAATTCTACACGACATTGCCAATGCCCTTGAAGTAAATGAGAAAACAATTAAAGCTGAGAATGATTTAGATGTTG
tttgctt CT-rich tract
ttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgttaaggctttgattgcaagtgaactcaaattcagatattgtttcttgttatgccagtgtactcaacttgtatgcaatttgcttacagGCCTTATCTTCAGAAGATAGGAAACAAATTCTACACGACATTGCCAATGCCCTTGAAGTAAATGAGAAAACAATTAAAGCTGAGAATGATTTAGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA