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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgacatatttacatttccccccaccccacacacaaaaaatagccgatatacaaaaatcacatttgaactggtcaatactcatatgctcggtaaaaagttcttgctaagtggctaacaatgtcttaatttttcatgtcgttttcctcttattcaaagcagAAGATGCTAGATTCTGCCAATGAAAGTAAAAAAGGAACAGAAGATGAGCTCACATGTAGTGTTTGCCTAGAACAAGTTACCGTAGGGGAAATCGTTCGCA

Basic information

species Arabidopsis thaliana
transcript AT3G55530.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074728|gb|DR370485.1|DR370485
EST:     TGGTTGCTCTTTGGCAAAGCAAGCGTCAACCTCATCCTCAGCTGAG                         AAGATGCTAGATTCTGCCAATGAAAGTAAAAAAGGAACAGAAGATGAGCTC
genomic: TGGTTGCTCTTTGGCAAAGCAAGCGTCAACCTCATCCTCAGCTGAGgtatatgaca ... ttcaaagcagAAGATGCTAGATTCTGCCAATGAAAGTAAAAAAGGAACAGAAGATGAGCTC
EST: gi|86078329|gb|DR374086.1|DR374086
EST:     TGGTTGCTCTTTGGCAAAGCAAGCGTCAACCTCATCCTCAGCTGAG                         AAGATGCTAGATTCTGCCAATGAAAGTAAAAAAGGAACAGAAGATGAGCTC
genomic: TGGTTGCTCTTTGGCAAAGCAAGCGTCAACCTCATCCTCAGCTGAGgtatatgaca ... ttcaaagcagAAGATGCTAGATTCTGCCAATGAAAGTAAAAAAGGAACAGAAGATGAGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagtggctaacaatgtcttaatttttcatgtcgttttcctcttattcaaagcagAAGATGCTAGATTCTGCCAATGAAAGTAAAAAAGGAACAGAAGATGAGCTCACATGTAGTGTTTGCCTAGAACAAGTTACCGTAGGGGAAATCGTTCGCA
                               tcgttttcctcttatt  CT-rich tract
            aatgtcttaattttt  TA-rich tract