1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtccgcaaattccccccaatcttcgaatataattctcagttgattataaacagtctctgtatccttatatgcttaatgcttacgcatacttaaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG
species | Arabidopsis thaliana |
transcript | AT3G53580.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAG GAGCAACTTTGGCCTGTGGAACTGGEST: gi|125253821|gb|EL267906.1|EL267906
genomic: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAGgtccgcaaat ... aaaactgcagGAGCAACTTTGGCCTGTGGAACTGG
EST: TATCACGTTCTCATTTGAAAATGCGTGCGTGGGAGCGCGGAGCAG GAGCAACTTTGGCCTGTGGAAEST: gi|164210826|gb|ES169349.1|ES169349
genomic: TATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAGgtccgcaaat ... aaaactgcagGAGCAACTTTGGCCTGTGGAA
EST: GTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGGAGCGCGGAGCAG GAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGEST: gi|86082085|gb|DR377844.1|DR377844
genomic: GTCTTATCACGTTCTCATTTGAAAATGCGTGTGT-GGGAGCGCGGAGCAGgtccgcaaat ... aaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGG
EST: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAG GAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAGEST: gi|86080834|gb|DR376591.1|DR376591
genomic: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAGgtccgcaaat ... aaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAG
EST: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAG GAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAGEST: gi|86033409|gb|DR329162.1|DR329162
genomic: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAGgtccgcaaat ... aaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAG
EST: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAS-AG GAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAGEST: gi|86078439|gb|DR374196.1|DR374196
genomic: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAGgtccgcaaat ... aaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAG
EST: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAG GAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAGEST: gi|116478499|gb|EG521091.1|EG521091
genomic: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAGgtccgcaaat ... aaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAG
EST: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAG GAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAGEST: gi|124789106|gb|EH878785.1|EH878785
genomic: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAGgtccgcaaat ... aaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAG
EST: CGTGTGTGGGAGCGCGGAGCAG GAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAGEST: gi|116478497|gb|EG521089.1|EG521089
genomic: CGTGTGTGGGAGCGCGGAGCAGgtccgcaaat ... aaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAG
EST: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAG GAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAG
genomic: GGTCTTATCACGTTCTCATTTGAAAATGCGTGTGTGGGAGCGCGGAGCAGgtccgcaaat ... aaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAG
taaacagtctctgtatccttatatgcttaatgcttacgcatacttaaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG
tgcttac putative branch site (score: 2)
atacttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgcaaattccccccaatcttcgaatataattctcagttgattataaacagtctctgtatccttatatgcttaatgcttacgcatacttaaaactgcagGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG