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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgataatgcaatttccatggaatccatattgctcagacagttatttctggagacttttgttgactagtgtactcagactttgctcattccattctgacagATATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCGTCTGAATATATCAAAATACCTGATTATAAG

Basic information

species Arabidopsis thaliana
transcript AT3G53570.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53570.4 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA03G33100.1 (Glycine max), 3'ss of exon 6
-cgataatgcaatttccatggaatccatattgctcagacagttatttctggagacttttgttgactagtgtactcagact-----ttgctcattccattctgacagATATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCGTCTGAATATATCAAAATACCTGATTATAAG
     ||   ||||   || ||||    |    | ||| | |||      || | ||||| | ||| || |  |||         |||    |  ||| |   ||| ||||||||||||| |  |||| ||||| ||||||||||| |||||||||||| |  | || || ||||  || ||| | || || ||||||
aaacaaactaaattattattgaattggcacattttagataatta------gataattttggtcacttgtatcttcaagtcacttattgtgtctctcatacctgcagTTATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAACATTCTTCTTATTTCATCAGAATTCATTAAAGTGCCAGACTATAAG

upper sequence: AT3G53570.4 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: EFJ18766 (Selaginella moellendorffii), 3'ss of exon 5
--cgataatgcaatttccatggaatccatattgctcagacagttatttctggagacttttgttgactagtgtactcagactt--tgctcattccattctgacagATATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCGTCTGAATATATCAAAATACCTGATTATAAG
   | |  | | |   | | | | |||   ||  |   |  |     |  |  |    | ||  | || | |      |  |  ||    ||   ||||  |||| ||||| ||| |    || ||||||||||||||||||||||| ||||||||  | || ||  | ||  || ||||| | || || |  |||
aaagctggtactaga-cgaagaattcctctttatttgcatggca---tgggatgcacatagtgaaatattttgtgtgaatctgatgtgtgttgttttcttgcagACATGCACGATCTTACTCTTATCCACACGGATTTGAAGCCGGAAAACATTCTGCTCGTGTCTCCAGATCATGTCAAAGTCCCCGACTTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctggagacttttgttgactagtgtactcagactttgctcattccattctgacagATATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCGTCTGAATATATCAAAATACCTGATTATAAG
            tgttgac  putative branch site (score: 3)
                                         ttccattct  putative PPT
         ttttgtt  TA-rich tract