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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcaaagaaacattagctaatagagtgggcaatccaatttaagttttggtttgattttatagaaactaaagtctaaaaccaaattacaatgttatgtttaggtttggtttcgtttgacgaactcgattaattagcttttccaaatggtctcgttgcaaatgtcttacttgtattatataatcctccagGTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGAAGCCGACATTGTGATAGTTGGGGTTGGTGCAAAACCATTGACATCCTTATTCAAGGGACAGG

Basic information

species Arabidopsis thaliana
transcript AT3G52880.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125122086|gb|EL168902.1|EL168902
EST:     CCAAATGGAGAG                         GTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGAAGCCGACATTGTG
genomic: CCAAATGGAGAGgtaatcaaag ... aatcctccagGTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGAAGCCGACATTGTG
EST: gi|125041224|gb|EL113493.1|EL113493
EST:     ATTAAAGGAACAGTGGCATCTGGGTTCACAGCTCAGCCAAATGGAGAG                         GTGAAGGAAGTACAACTCAAGGATGGGA
genomic: ATTAAAGGAACAGTGGCATCTGGGTTCACAGCTCAGCCAAATGGAGAGgtaatcaaag ... aatcctccagGTGAAGGAAGTACAACTCAAGGATGGGA
EST: gi|125229182|gb|EL243267.1|EL243267
EST:     CAGTGGCATCTGGGTTCACAGCTCAGCCAAATGGAGAG                         GTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGAAGCCGACATTGTG
genomic: CAGTGGCATCTGGGTTCACAGCTCAGCCAAATGGAGAGgtaatcaaag ... aatcctccagGTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGAAGCCGACATTGTG
EST: gi|124778146|gb|EH868089.1|EH868089
EST:     ATTTAAAGGAACAGTGGCATCTGGGTTCACAGCTCAGACCAAATGGAGAG                         GTGAAGGAAGTACAACTCAAGGATGGGAGGACATT
genomic: A-TTAAAGGAACAGTGGCATCTGGGTTCACAGCTCAG-CCAAATGGAGAGgtaatcaaag ... aatcctccagGTGAAGGAAGTACAACTCAAGGATGGGAGGACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttttccaaatggtctcgttgcaaatgtcttacttgtattatataatcctccagGTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGAAGCCGACATTGTGATAGTTGGGGTTGGTGCAAAACCATTGACATCCTTATTCAAGGGACAGG
                           gtcttac  putative branch site (score: 3)
                                               tcctcc  putative PPT
                              ttacttgtattatata  TA-rich tract