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...agttctactgaattttcccctttgcgtatatcataagttgtcttactataatctttgttaatgtgcattttctgtatccatatgttatttcacttggcagCCTCTGGAGCTTTGCATTGTGGTATCAACAATGGAGGATGCTGGAGAGAATCCCGAGGTGGCTTCACTTACTCTGCTTGCGTA
species | Arabidopsis thaliana |
transcript | AT3G52850.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACTGTTCAAGGNGTTAAATTCGTTGGTGACGGTTACACTCACTGCAAAG CCTCTGGAGCTTTGCATTGTGGTATCAACAATGGAGGEST: gi|86037686|gb|DR333441.1|DR333441
genomic: TACTGTTCAAGGTGTTAAATTCGTTGGTGACGGTTACACTCACTGCAAAGgtaaattatt ... cacttggcagCCTCTGGAGCTTTGCATTGTGGTATCAACAATGGAGG
EST: TACTGTTCAAGGTGTTAAATTCGTTGGTGACGGTTACACTCACTGCAAAG CCTCTGGAGCTTTGCATTGTGGTATCAACAATGGAGGATGCTGGAGAGAAT
genomic: TACTGTTCAAGGTGTTAAATTCGTTGGTGACGGTTACACTCACTGCAAAGgtaaattatt ... cacttggcagCCTCTGGAGCTTTGCATTGTGGTATCAACAATGGAGGATGCTGGAGAGAAT
ctataatctttgttaatgtgcattttctgtatccatatgttatttcacttggcagCCTCTGGAGCTTTGCATTGTGGTATCAACAATGGAGGATGCTGGAGAGAATCCCGAGGTGGCTTCACTTACTCTGCTTGCGTA
tgttaat putative branch site (score: 3)
tttcactt putative PPT
atatgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttctactgaattttcccctttgcgtatatcataagttgtcttactataatctttgttaatgtgcattttctgtatccatatgttatttcacttggcagCCTCTGGAGCTTTGCATTGTGGTATCAACAATGGAGGATGCTGGAGAGAATCCCGAGGTGGCTTCACTTACTCTGCTTGCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - -atcataa